RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 PRKAG2Q9UGJ0 569 aa20.64■□□□□ 0.89
DDX41-217ENST00000515562 ZNF536O15090 1300 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 TOP1P11387 765 aaKnown RBP20.63■□□□□ 0.89
DDX41-217ENST00000515562 NT5C2P49902 561 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 HAND2P61296 217 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 SNX17Q15036 470 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 CCDC96Q2M329 555 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 AKNAD1Q5T1N1 836 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 SLC39A5Q6ZMH5 540 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 TDHQ8IZJ6 230 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 RNF146Q9NTX7 359 aa20.63■□□□□ 0.89
DDX41-217ENST00000515562 ADCYAP1R1P41586 468 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 C1orf53Q5VUE5 145 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 MFSD6Q6ZSS7 791 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 CHMP4CQ96CF2 233 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 ZHX1Q9UKY1 873 aaPredicted RBP20.62■□□□□ 0.89
DDX41-217ENST00000515562 FAM184BQ9ULE4 1060 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 PRR12Q9ULL5 1215 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 PHF24Q9UPV7 400 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 ATP11BQ9Y2G3 1177 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 SUPT16HQ9Y5B9 1047 aaKnown RBP20.62■□□□□ 0.89
DDX41-217ENST00000515562 DNAH12Q6ZR08 3092 aa20.62■□□□□ 0.89
DDX41-217ENST00000515562 SMCHD1A6NHR9 2005 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 SZT2Q5T011 3432 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 SNAI1O95863 264 aaPredicted RBP20.61■□□□□ 0.89
DDX41-217ENST00000515562 PGK1P00558 417 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 CWC27Q6UX04 472 aaKnown RBP20.61■□□□□ 0.89
DDX41-217ENST00000515562 RASGRP2Q7LDG7 609 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 FGD4Q96M96 766 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 AGBL1Q96MI9 1066 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 LBHD1Q9BQE6 289 aaPredicted RBP20.61■□□□□ 0.89
DDX41-217ENST00000515562 TMEM47Q9BQJ4 181 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 ABHD16BQ9H3Z7 469 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.61■□□□□ 0.89
DDX41-217ENST00000515562 MTMR7Q9Y216 660 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 LTBP2Q14767 1821 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 LAMA3Q16787 3333 aa20.61■□□□□ 0.89
DDX41-217ENST00000515562 POTEB2H3BUK9 544 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 CCDC174Q6PII3 467 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 ARMCX2Q7L311 632 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 TBC1D10CQ8IV04 446 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 ESR2Q92731 530 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 TTC14Q96N46 770 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 TRERF1Q96PN7 1200 aa20.6■□□□□ 0.89
DDX41-217ENST00000515562 A1CFQ9NQ94 594 aaKnown RBP20.6■□□□□ 0.89
DDX41-217ENST00000515562 SYNRGQ9UMZ2 1314 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 SOX1O00570 391 aaPredicted RBP20.59■□□□□ 0.89
DDX41-217ENST00000515562 ZNF213O14771 459 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 ADAMTS4O75173 837 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 ALAS1P13196 640 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 MDM2Q00987 491 aaPredicted RBP20.59■□□□□ 0.89
DDX41-217ENST00000515562 ACVR2BQ13705 512 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 LRIT3Q3SXY7 679 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 TRIM60Q495X7 471 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 BTNL9Q6UXG8 535 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 FAM133AQ8N9E0 248 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 FERMT2Q96AC1 680 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 LENG1Q96BZ8 264 aaPredicted RBP20.59■□□□□ 0.89
DDX41-217ENST00000515562 TSEN34Q9BSV6 310 aaKnown RBP20.59■□□□□ 0.89
DDX41-217ENST00000515562 CCPG1Q9ULG6 757 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 MCM3APO60318 1980 aa20.59■□□□□ 0.89
DDX41-217ENST00000515562 DUSP11O75319 330 aaKnown RBP20.58■□□□□ 0.89
DDX41-217ENST00000515562 ICAM1P05362 532 aa20.58■□□□□ 0.89
DDX41-217ENST00000515562 CCDC144CPQ8IYA2 1237 aa20.58■□□□□ 0.89
DDX41-217ENST00000515562 DSCC1Q9BVC3 393 aa20.58■□□□□ 0.89
DDX41-217ENST00000515562 RANBP17Q9H2T7 1088 aaKnown RBP20.58■□□□□ 0.89
DDX41-217ENST00000515562 NEDD4P46934 1319 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 A0A1W2PQ45 241 aaPredicted RBP20.57■□□□□ 0.88
DDX41-217ENST00000515562 A0A1W2PQY0 241 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 MOXD2PA6NHM9 499 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 ASB14A6NK59 587 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 PDHBP11177 359 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 CNTN2Q02246 1040 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 SYDE2Q5VT97 1194 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 GPR153Q6NV75 609 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 LRCH3Q96II8 777 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 SPC25Q9HBM1 224 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 PRDM5Q9NQX1 630 aaPredicted RBP20.57■□□□□ 0.88
DDX41-217ENST00000515562 PNMA2Q9UL42 364 aa20.57■□□□□ 0.88
DDX41-217ENST00000515562 FRMPD2Q68DX3 1309 aaPredicted RBP20.56■□□□□ 0.88
DDX41-217ENST00000515562 LRRC37A2A6NM11 1700 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 CST5P28325 142 aaPredicted RBP20.56■□□□□ 0.88
DDX41-217ENST00000515562 SNAP25P60880 206 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 CCDC144BQ3MJ40 725 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 IQCA1Q86XH1 822 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 NUP133Q8WUM0 1156 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 CYP39A1Q9NYL5 469 aa20.56■□□□□ 0.88
DDX41-217ENST00000515562 SLC16A2P36021 539 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 ACLYP53396 1101 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 IMMTQ16891 758 aaKnown RBP20.55■□□□□ 0.88
DDX41-217ENST00000515562 CCDC178Q5BJE1 867 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 MUM1L1Q5H9M0 696 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 TTBK2Q6IQ55 1244 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 DGKHQ86XP1 1220 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 KLHDC9Q8NEP7 349 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 KATNBL1Q9H079 304 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 GPCPD1Q9NPB8 672 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 PDLIM7Q9NR12 457 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 CTNNA3Q9UI47 895 aa20.55■□□□□ 0.88
DDX41-217ENST00000515562 SNHG28P0DPA3 235 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms