RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	CSF2RA	P15509	400 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	OAZ1	P54368	228 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	RASIP1	Q5U651	963 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	PSRC1	Q6PGN9	363 aa	Predicted RBP	18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	ARMCX2	Q7L311	632 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	CHST13	Q8NET6	341 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	GAS2L1	Q99501	681 aa	Predicted RBP	18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	PBX4	Q9BYU1	374 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	ZNF287	Q9HBT7	754 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	FEM1B	Q9UK73	627 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	IGKV6D-41	A0A0C4DH26	115 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	FAM126B	Q8IXS8	530 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	MKL1	Q969V6	931 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	FGD4	Q96M96	766 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	PPP1R12C	Q9BZL4	782 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	SYNPO2	Q9UMS6	1093 aa		18.81	■□□□□ 0.6
LMNA-223	ENST00000515459	GRXCR1	A8MXD5	290 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	PBX2	P40425	430 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	ZNF365	Q70YC5	407 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	CCDC144CP	Q8IYA2	1237 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	KBTBD3	Q8NAB2	608 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	CEP95	Q96GE4	821 aa		18.8	■□□□□ 0.6
LMNA-223	ENST00000515459	TNFRSF10A	O00220	468 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	CTAGE5	O15320	804 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	TTLL1	O95922	423 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	FDX1	P10109	184 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	ACR	P10323	421 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	NKX3-2	P78367	333 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	GMCL1P1	Q8NEA9	526 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	PPM1E	Q8WY54	764 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	APPBP2	Q92624	585 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	OSBP2	Q969R2	916 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	KATNBL1	Q9H079	304 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	HOMER2	Q9NSB8	354 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	ECHDC1	Q9NTX5	307 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	MTMR4	Q9NYA4	1195 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	TTC28	Q96AY4	2481 aa		18.79	■□□□□ 0.6
LMNA-223	ENST00000515459	SMARCA5	O60264	1052 aa	Predicted RBP	18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	PRDM1	O75626	825 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	CD4	P01730	458 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	GNAT2	P19087	354 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	TDO2	P48775	406 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	AKNAD1	Q5T1N1	836 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	LRRC47	Q8N1G4	583 aa	Known RBP	18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	PRDM12	Q9H4Q4	367 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	IL23A	Q9NPF7	189 aa		18.78	■□□□□ 0.6
LMNA-223	ENST00000515459	GBF1	Q92538	1859 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	RNF113A	O15541	343 aa	Known RBP	18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	GPAA1	O43292	621 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	APP	P05067	770 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	BMP3	P12645	472 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	CYP2C18	P33260	490 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	BEX3	Q00994	111 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	CNTN2	Q02246	1040 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	TNFAIP2	Q03169	654 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	RAB30	Q15771	203 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	NOL8	Q76FK4	1167 aa	Known RBP	18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	FAM133A	Q8N9E0	248 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	ATXN2L	Q8WWM7	1075 aa	Known RBP	18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	HERVK_113	Q902F9	699 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	MTIF3	Q9H2K0	278 aa	Known RBP	18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	ACAD9	Q9H845	621 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	MSRA	Q9UJ68	235 aa		18.77	■□□□□ 0.6
LMNA-223	ENST00000515459	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	TMEM232	C9JQI7	657 aa		18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	CABYR	O75952	493 aa		18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	ZFY	P08048	801 aa	Predicted RBP	18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	STAT2	P52630	851 aa		18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	SLFN13	Q68D06	897 aa		18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	CXCL17	Q6UXB2	119 aa		18.76	■□□□□ 0.59
LMNA-223	ENST00000515459	MYO9B	Q13459	2157 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	ASB14	A6NK59	587 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	FGB	P02675	491 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	TSPY3	P0CV98	308 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	TSPY8	P0CW00	308 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	SLC43A3	Q8NBI5	491 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	GPATCH3	Q96I76	525 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	HIPK3	Q9H422	1215 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	A1CF	Q9NQ94	594 aa	Known RBP	18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	RNF146	Q9NTX7	359 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	THEG	Q9P2T0	379 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	ISY1	Q9ULR0	285 aa	Known RBP	18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	PLIN4	Q96Q06	1357 aa		18.75	■□□□□ 0.59
LMNA-223	ENST00000515459	ASTN1	O14525	1302 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	LRRC37A2	A6NM11	1700 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	PATL2	C9JE40	543 aa	Known RBP	18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	PDE4B	Q07343	736 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	FSCN1	Q16658	493 aa	Known RBP	18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	TLK2	Q86UE8	772 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	FAM160B2	Q86V87	743 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	IFNL3	Q8IZI9	196 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	NEDD1	Q8NHV4	660 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	CHURC1	Q8WUH1	139 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	ASB2	Q96Q27	587 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	SEZ6L	Q9BYH1	1024 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	AP5M1	Q9H0R1	490 aa		18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	CXXC1	Q9P0U4	656 aa	Predicted RBP	18.74	■□□□□ 0.59
LMNA-223	ENST00000515459	GNE	Q9Y223	722 aa	Known RBP	18.74	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms