RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MORC2Q9Y6X9 1032 aaPredicted RBP18.3■□□□□ 0.52
NUP54-214ENST00000514307 SIPA1L1O43166 1804 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 A0A1W2PQ27 194 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 A0A1W2PQ64 194 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 A0A1W2PQD8 194 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 UNCXA6NJT0 531 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 ADM5C9JUS6 153 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 TOB1P50616 345 aaPredicted RBP18.29■□□□□ 0.52
NUP54-214ENST00000514307 NPY5RQ15761 445 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 PIK3AP1Q6ZUJ8 805 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 REXO1Q8N1G1 1221 aaKnown RBP18.29■□□□□ 0.52
NUP54-214ENST00000514307 SHISA4Q96DD7 197 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 GZF1Q9H116 711 aaPredicted RBP18.29■□□□□ 0.52
NUP54-214ENST00000514307 PCDHA7Q9UN72 937 aa18.29■□□□□ 0.52
NUP54-214ENST00000514307 CTDP1Q9Y5B0 961 aaPredicted RBP18.29■□□□□ 0.52
NUP54-214ENST00000514307 CUTAO60888 179 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 ATP2B1P20020 1258 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 PRKG1Q13976 671 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 TTLL12Q14166 644 aaPredicted RBP18.28■□□□□ 0.52
NUP54-214ENST00000514307 NONOQ15233 471 aaKnown RBP eCLIP18.28■□□□□ 0.52
NUP54-214ENST00000514307 CAVIN1Q6NZI2 390 aaKnown RBP18.28■□□□□ 0.52
NUP54-214ENST00000514307 CCDC73Q6ZRK6 1079 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 ANKRD13AQ8IZ07 590 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 KIFC2Q96AC6 838 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 CDCA5Q96FF9 252 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 PGBD1Q96JS3 809 aa18.28■□□□□ 0.52
NUP54-214ENST00000514307 POTECB2RU33 542 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 M0R2N6 131 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 ZBED4O75132 1171 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 CMA1P23946 247 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 ORC2Q13416 577 aaPredicted RBP18.27■□□□□ 0.52
NUP54-214ENST00000514307 GSE1Q14687 1217 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 PTPAQ15257 358 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 KIAA1755Q5JYT7 1200 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 TTC38Q5R3I4 469 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 TYW1BQ6NUM6 668 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 CCAR1Q8IX12 1150 aaKnown RBP18.27■□□□□ 0.52
NUP54-214ENST00000514307 KRI1Q8N9T8 703 aaKnown RBP18.27■□□□□ 0.52
NUP54-214ENST00000514307 NAP1L4Q99733 375 aaKnown RBP18.27■□□□□ 0.52
NUP54-214ENST00000514307 SLF1Q9BQI6 1058 aa18.27■□□□□ 0.52
NUP54-214ENST00000514307 GLIS2Q9BZE0 524 aaPredicted RBP18.27■□□□□ 0.52
NUP54-214ENST00000514307 GREB1LQ9C091 1923 aaPredicted RBP18.27■□□□□ 0.51
NUP54-214ENST00000514307 FOSP01100 380 aaPredicted RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 MTMR2Q13614 643 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 MAP3K11Q16584 847 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 TPRNQ4KMQ1 711 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 ZNF579Q8NAF0 562 aaKnown RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 FERMT2Q96AC1 680 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 C12orf42Q96LP6 360 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 FTOQ9C0B1 505 aaKnown RBP eCLIP18.26■□□□□ 0.51
NUP54-214ENST00000514307 RANBP17Q9H2T7 1088 aaKnown RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 RRAGCQ9HB90 399 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 EMILIN3Q9NT22 766 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 DDX19AQ9NUU7 478 aaKnown RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 HOXC10Q9NYD6 342 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 BIN2Q9UBW5 565 aaPredicted RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 MRPL11Q9Y3B7 192 aaKnown RBP18.26■□□□□ 0.51
NUP54-214ENST00000514307 AFG3L2Q9Y4W6 797 aa18.26■□□□□ 0.51
NUP54-214ENST00000514307 PPATQ06203 517 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 ZNF174Q15697 407 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 CCDC183Q5T5S1 534 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.25■□□□□ 0.51
NUP54-214ENST00000514307 CCDC84Q86UT8 332 aaPredicted RBP18.25■□□□□ 0.51
NUP54-214ENST00000514307 TANGO6Q9C0B7 1094 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.25■□□□□ 0.51
NUP54-214ENST00000514307 PCDHB6Q9Y5E3 794 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 SRPRBQ9Y5M8 271 aaKnown RBP18.25■□□□□ 0.51
NUP54-214ENST00000514307 MYH8P13535 1937 aa18.25■□□□□ 0.51
NUP54-214ENST00000514307 LAD1O00515 517 aa18.24■□□□□ 0.51
NUP54-214ENST00000514307 CXCL11O14625 94 aa18.24■□□□□ 0.51
NUP54-214ENST00000514307 PPP1R11O60927 126 aaPredicted RBP18.24■□□□□ 0.51
NUP54-214ENST00000514307 MARCKSP29966 332 aaPredicted RBP18.24■□□□□ 0.51
NUP54-214ENST00000514307 SH3D19Q5HYK7 790 aa18.24■□□□□ 0.51
NUP54-214ENST00000514307 ERO1BQ86YB8 467 aa18.24■□□□□ 0.51
NUP54-214ENST00000514307 MRPS27Q92552 414 aaKnown RBP18.24■□□□□ 0.51
NUP54-214ENST00000514307 FAM13BQ9NYF5 915 aa18.24■□□□□ 0.51
NUP54-214ENST00000514307 USP17L15C9J2P7 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L13C9JLJ4 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L11C9JVI0 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L18D6R9N7 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L22D6RA61 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L17D6RBQ6 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L19D6RCP7 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L20D6RJB6 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 PTPREP23469 700 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 USP17L24Q0WX57 530 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 VGLL4Q14135 290 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 COG2Q14746 738 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 EARS2Q5JPH6 523 aaKnown RBP18.23■□□□□ 0.51
NUP54-214ENST00000514307 JAKMIP3Q5VZ66 844 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 ARL6IP4Q66PJ3 421 aaKnown RBP18.23■□□□□ 0.51
NUP54-214ENST00000514307 NEK8Q86SG6 692 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 LDHDQ86WU2 507 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 SAMD3Q8N6K7 520 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 FSIP1Q8NA03 581 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 RPAP3Q9H6T3 665 aaPredicted RBP18.23■□□□□ 0.51
NUP54-214ENST00000514307 ABCB11O95342 1321 aa18.23■□□□□ 0.51
NUP54-214ENST00000514307 CTAGE5O15320 804 aa18.22■□□□□ 0.51
NUP54-214ENST00000514307 FLOT1O75955 427 aa18.22■□□□□ 0.51
NUP54-214ENST00000514307 VCAM1P19320 739 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms