RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 KCNN1Q92952 543 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 DHRS1Q96LJ7 313 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 TANGO6Q9C0B7 1094 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 PHAXQ9H814 394 aaKnown RBP5.84□□□□□ -1.47
NUP54-212ENST00000513248 SUSD2Q9UGT4 822 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 PCDHA11Q9Y5I1 949 aa5.84□□□□□ -1.47
NUP54-212ENST00000513248 CBFA2T2O43439 604 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 NUAK1O60285 661 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 SNW1Q13573 536 aaKnown RBP5.83□□□□□ -1.48
NUP54-212ENST00000513248 TMC3Q7Z5M5 1100 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 IRF2BP1Q8IU81 584 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 LILRA2Q8N149 483 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 ZNF513Q8N8E2 541 aaPredicted RBP5.83□□□□□ -1.48
NUP54-212ENST00000513248 SYTL5Q8TDW5 730 aaPredicted RBP5.83□□□□□ -1.48
NUP54-212ENST00000513248 MICAL1Q8TDZ2 1067 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 HDAC8Q9BY41 377 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 MKRN2Q9H000 416 aaKnown RBP5.83□□□□□ -1.48
NUP54-212ENST00000513248 PRR13Q9NZ81 148 aa5.83□□□□□ -1.48
NUP54-212ENST00000513248 EIF4G3O43432 1585 aaKnown RBP5.83□□□□□ -1.48
NUP54-212ENST00000513248 ATP2B1P20020 1258 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 HK2P52789 917 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 SERINC3Q13530 473 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 SF3A1Q15459 793 aaKnown RBP5.82□□□□□ -1.48
NUP54-212ENST00000513248 AXDND1Q5T1B0 1012 aaPredicted RBP5.82□□□□□ -1.48
NUP54-212ENST00000513248 CELF2-AS1Q8N7Q2 184 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 PDZD8Q8NEN9 1154 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 ENOX1Q8TC92 643 aaKnown RBP5.82□□□□□ -1.48
NUP54-212ENST00000513248 SMARCC1Q92922 1105 aaPredicted RBP5.82□□□□□ -1.48
NUP54-212ENST00000513248 PRDM14Q9GZV8 571 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 KCNK12Q9HB15 430 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 SP110Q9HB58 689 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 ZNF281Q9Y2X9 895 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 MSRB2Q9Y3D2 182 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 CUX1P39880 1505 aa5.82□□□□□ -1.48
NUP54-212ENST00000513248 PEX10O60683 326 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 SEMA7AO75326 666 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 ERVFC1P60507 584 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 AUHQ13825 339 aaKnown RBP5.81□□□□□ -1.48
NUP54-212ENST00000513248 RAB33AQ14088 237 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 NR0B2Q15466 257 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 NBPF6Q5VWK0 638 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 ANKS3Q6ZW76 656 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 DAGLBQ8NCG7 672 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 DHX38Q92620 1227 aaKnown RBP5.81□□□□□ -1.48
NUP54-212ENST00000513248 NBPF4Q96M43 638 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 ADAMTS10Q9H324 1103 aa5.81□□□□□ -1.48
NUP54-212ENST00000513248 WRNQ14191 1432 aaPredicted RBP eCLIP5.81□□□□□ -1.48
NUP54-212ENST00000513248 TARBP1Q13395 1621 aaKnown RBP5.81□□□□□ -1.48
NUP54-212ENST00000513248 GRIN2BQ13224 1484 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 SNAPC4Q5SXM2 1469 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 SIGLEC6O43699 453 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 PRAMEF1O95521 474 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 CAPNS1P04632 268 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 HOXA5P20719 270 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 TEKQ02763 1124 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 BBS9Q3SYG4 887 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 TDRD10Q5VZ19 366 aaKnown RBP5.8□□□□□ -1.48
NUP54-212ENST00000513248 CYB5RLQ6IPT4 315 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 RNF111Q6ZNA4 994 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 CCDC144CPQ8IYA2 1237 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 C7orf61Q8IZ16 206 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 OXR1Q8N573 874 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 ZNF655Q8N720 491 aaPredicted RBP5.8□□□□□ -1.48
NUP54-212ENST00000513248 HNRNPLLQ8WVV9 542 aaKnown RBP5.8□□□□□ -1.48
NUP54-212ENST00000513248 TCTN2Q96GX1 697 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 DRC1Q96MC2 740 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 RNF32Q9H0A6 362 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 KLHL25Q9H0H3 589 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 SLC6A17Q9H1V8 727 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 ACTR10Q9NZ32 417 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 FBXL21Q9UKT6 434 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 PCDHB12Q9Y5F1 795 aa5.8□□□□□ -1.48
NUP54-212ENST00000513248 GAPVD1Q14C86 1478 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 FITM1A5D6W6 292 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 ZGLP1P0C6A0 271 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 SLC7A5Q01650 507 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 MRM1Q6IN84 353 aaKnown RBP5.79□□□□□ -1.48
NUP54-212ENST00000513248 SYTL4Q96C24 671 aaPredicted RBP5.79□□□□□ -1.48
NUP54-212ENST00000513248 C20orf173Q96LM9 149 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 FOXP3Q9BZS1 431 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 CWC22Q9HCG8 908 aaKnown RBP5.79□□□□□ -1.48
NUP54-212ENST00000513248 PARD6AQ9NPB6 346 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 CHST7Q9NS84 486 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 GFOD1Q9NXC2 390 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 PCDHB10Q9UN67 800 aa5.79□□□□□ -1.48
NUP54-212ENST00000513248 A0A087WZG4 1122 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 STK10O94804 968 aaKnown RBP5.78□□□□□ -1.48
NUP54-212ENST00000513248 PCBP3P57721 371 aaKnown RBP5.78□□□□□ -1.48
NUP54-212ENST00000513248 DLG4P78352 724 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 NCAPHQ15003 741 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 SNX17Q15036 470 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 PPP2R5EQ16537 467 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 DCAF15Q66K64 600 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 VHLLQ6RSH7 139 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 FAM178BQ8IXR5 827 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 USHBP1Q8N6Y0 703 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 HIRIP3Q9BW71 556 aaPredicted RBP5.78□□□□□ -1.48
NUP54-212ENST00000513248 MCOLN1Q9GZU1 580 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 GP6Q9HCN6 339 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 TCFL5Q9UL49 500 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms