RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SCRN1Q12765 414 aa34.38■■■■□ 3.09
LIMCH1-211ENST00000509638 GPRC5AQ8NFJ5 357 aa34.38■■■■□ 3.09
LIMCH1-211ENST00000509638 SMCHD1A6NHR9 2005 aa34.37■■■■□ 3.09
LIMCH1-211ENST00000509638 HOMER1Q86YM7 354 aa34.37■■■■□ 3.09
LIMCH1-211ENST00000509638 CPXCR1Q8N123 301 aa34.37■■■■□ 3.09
LIMCH1-211ENST00000509638 SPATC1LQ9H0A9 340 aa34.37■■■■□ 3.09
LIMCH1-211ENST00000509638 RAVER2Q9HCJ3 691 aaKnown RBP34.37■■■■□ 3.09
LIMCH1-211ENST00000509638 SMARCA1P28370 1054 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 GTF3C6Q969F1 213 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 TEX13BQ9BXU2 312 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 ZNF536O15090 1300 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 GPR25O00155 361 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 FUT2Q10981 343 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 NECAB1Q8N987 351 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 PIBF1Q8WXW3 757 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 MTMR8Q96EF0 704 aa34.36■■■■□ 3.09
LIMCH1-211ENST00000509638 OAZ1P54368 228 aa34.35■■■■□ 3.09
LIMCH1-211ENST00000509638 QRICH1Q2TAL8 776 aa34.35■■■■□ 3.09
LIMCH1-211ENST00000509638 Q3C1V9 767 aa34.35■■■■□ 3.09
LIMCH1-211ENST00000509638 SNRNP48Q6IEG0 339 aaKnown RBP34.35■■■■□ 3.09
LIMCH1-211ENST00000509638 PIGSQ96S52 555 aa34.35■■■■□ 3.09
LIMCH1-211ENST00000509638 CPLX1O14810 134 aa34.34■■■■□ 3.09
LIMCH1-211ENST00000509638 ATP2A1O14983 1001 aa34.34■■■■□ 3.09
LIMCH1-211ENST00000509638 FOXN1O15353 648 aa34.34■■■■□ 3.09
LIMCH1-211ENST00000509638 MCM2P49736 904 aa34.34■■■■□ 3.09
LIMCH1-211ENST00000509638 ICAM1P05362 532 aa34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 NTRK3Q16288 839 aa34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 RRP36Q96EU6 259 aaKnown RBP34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 ZSCAN31Q96LW9 406 aaPredicted RBP34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 AGBL1Q96MI9 1066 aa34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 MOV10L1Q9BXT6 1211 aaKnown RBP34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 SH2B1Q9NRF2 756 aaPredicted RBP34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 RBBP6Q7Z6E9 1792 aaKnown RBP34.33■■■■□ 3.09
LIMCH1-211ENST00000509638 ZBTB5O15062 677 aa34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 TAL1P17542 331 aaPredicted RBP34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 STAT3P40763 770 aa34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 CCNA1P78396 465 aa34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 NOM1Q5C9Z4 860 aaKnown RBP34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 SEC63Q9UGP8 760 aaKnown RBP34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 CCPG1Q9ULG6 757 aa34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 PLXNB2O15031 1838 aa34.32■■■■□ 3.09
LIMCH1-211ENST00000509638 hCG_1642624A0A1W2PR95 340 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 SLC4A3P48751 1232 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 SP3Q02447 781 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 ST3GAL1Q11201 340 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 PHKBQ93100 1093 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 PORCNQ9H237 461 aa34.32■■■■□ 3.08
LIMCH1-211ENST00000509638 PPFIA3O75145 1194 aa34.31■■■■□ 3.08
LIMCH1-211ENST00000509638 IFNAR1P17181 557 aa34.31■■■■□ 3.08
LIMCH1-211ENST00000509638 CPLX2Q6PUV4 134 aaKnown RBP34.31■■■■□ 3.08
LIMCH1-211ENST00000509638 RIOX2Q8IUF8 465 aa34.31■■■■□ 3.08
LIMCH1-211ENST00000509638 ZNF296Q8WUU4 475 aaPredicted RBP34.31■■■■□ 3.08
LIMCH1-211ENST00000509638 ECM2O94769 699 aaPredicted RBP34.3■■■■□ 3.08
LIMCH1-211ENST00000509638 LACTBP83111 547 aaPredicted RBP34.3■■■■□ 3.08
LIMCH1-211ENST00000509638 USH1GQ495M9 461 aa34.3■■■■□ 3.08
LIMCH1-211ENST00000509638 PPP1R11O60927 126 aaPredicted RBP34.29■■■■□ 3.08
LIMCH1-211ENST00000509638 CCDC83Q8IWF9 413 aa34.29■■■■□ 3.08
LIMCH1-211ENST00000509638 HOMER2Q9NSB8 354 aa34.29■■■■□ 3.08
LIMCH1-211ENST00000509638 RIPK3Q9Y572 518 aa34.29■■■■□ 3.08
LIMCH1-211ENST00000509638 PNMA6FA0A0J9YX94 578 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 HSPA8P11142 646 aaKnown RBP34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 NCAPG2Q86XI2 1143 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 FBXO11Q86XK2 927 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 TMX3Q96JJ7 454 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 EFCC1Q9HA90 598 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 CASP8AP2Q9UKL3 1982 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 FKTNO75072 461 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 CDKL5O76039 1030 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 ERCC3P19447 782 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 WDR78Q5VTH9 848 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 CCAR1Q8IX12 1150 aaKnown RBP34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 SLC26A6Q9BXS9 759 aa34.28■■■■□ 3.08
LIMCH1-211ENST00000509638 SLC25A27O95847 323 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 ALAS1P13196 640 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 DOCK3Q8IZD9 2030 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 SHCBP1Q8NEM2 672 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 AMNQ9BXJ7 453 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 RNF26Q9BY78 433 aaPredicted RBP34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 ARHGAP39Q9C0H5 1083 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 PNMA2Q9UL42 364 aa34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 V9GY48 417 aaPredicted RBP34.27■■■■□ 3.08
LIMCH1-211ENST00000509638 COPB2P35606 906 aa34.26■■■■□ 3.07
LIMCH1-211ENST00000509638 CD99L2Q8TCZ2 262 aa34.26■■■■□ 3.07
LIMCH1-211ENST00000509638 RNF146Q9NTX7 359 aa34.26■■■■□ 3.07
LIMCH1-211ENST00000509638 CTDNEP1O95476 244 aa34.25■■■■□ 3.07
LIMCH1-211ENST00000509638 MAPK4P31152 587 aa34.25■■■■□ 3.07
LIMCH1-211ENST00000509638 CTCFP49711 727 aaPredicted RBP34.25■■■■□ 3.07
LIMCH1-211ENST00000509638 DTNBO60941 627 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 CTGFP29279 349 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 KIF22Q14807 665 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 TRIM22Q8IYM9 498 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 MROH8Q9H579 483 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 CWC22Q9HCG8 908 aaKnown RBP34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 ZNF236Q9UL36 1845 aa34.24■■■■□ 3.07
LIMCH1-211ENST00000509638 FMNL1O95466 1100 aaPredicted RBP34.23■■■■□ 3.07
LIMCH1-211ENST00000509638 AKAP17AQ02040 695 aaKnown RBP34.23■■■■□ 3.07
LIMCH1-211ENST00000509638 SNX21Q969T3 373 aa34.23■■■■□ 3.07
LIMCH1-211ENST00000509638 TRERF1Q96PN7 1200 aa34.23■■■■□ 3.07
LIMCH1-211ENST00000509638 RBM27Q9P2N5 1060 aaKnown RBP34.23■■■■□ 3.07
LIMCH1-211ENST00000509638 PCDHA1Q9Y5I3 950 aa34.23■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms