RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CALM2P0DP24 149 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 CALM3P0DP25 149 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 ALAS1P13196 640 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 CYP2B6P20813 491 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 KIF5BP33176 963 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 COPB2P35606 906 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 FLT3LGP49771 235 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 PRMT2P55345 433 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 RUFY3Q7L099 469 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 RIOX2Q8IUF8 465 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 SHCBP1Q8NEM2 672 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 REPS2Q8NFH8 660 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 PIBF1Q8WXW3 757 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 BRF1Q92994 677 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 AGBL1Q96MI9 1066 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 MMP19Q99542 508 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 MAD2L2Q9UI95 211 aa13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 ZNF214Q9UL59 606 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-210ENST00000509454 OAZ1P54368 228 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 APOBRQ0VD83 1088 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 TROAPQ12815 778 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 CDC37Q16543 378 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 ADGRF4Q8IZF3 695 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 SOCS4Q8WXH5 440 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 RANBP17Q9H2T7 1088 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 ZSWIM6Q9HCJ5 1215 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 PDRG1Q9NUG6 133 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 PALM3A6NDB9 673 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 SLC15A5A6NIM6 579 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 GOLGA8AA7E2F4 631 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 GOLGA8BA8MQT2 603 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 ZBTB43O43298 467 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 MYCP01106 439 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 FCER1AP12319 257 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 TAL1P17542 331 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 PTPREP23469 700 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 RGS2P41220 211 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 ANAPC15P60006 121 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 KCTD2Q14681 263 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 USH1GQ495M9 461 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 SLC9C1Q4G0N8 1177 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 DPP9Q86TI2 863 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 SGMS1Q86VZ5 419 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 HOMER1Q86YM7 354 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 TM6SF1Q9BZW5 370 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 RNF146Q9NTX7 359 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 RIPK3Q9Y572 518 aa13.29□□□□□ -0.28
LIMCH1-210ENST00000509454 DOCK3Q8IZD9 2030 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 ATP2A1O14983 1001 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 ADCY3O60266 1144 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 ICAM1P05362 532 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 GNAQP50148 359 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 APOA5Q6Q788 366 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 ANKRD35Q8N283 1001 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 DDX11Q96FC9 970 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 TRERF1Q96PN7 1200 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 C22orf23Q9BZE7 217 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 FBXO40Q9UH90 709 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 BRPF3Q9ULD4 1205 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 HPS5Q9UPZ3 1129 aa13.28□□□□□ -0.28
LIMCH1-210ENST00000509454 PLXNB2O15031 1838 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 STRNO43815 780 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 ELNP15502 786 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 ADORA2AP29274 412 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 MAP2K5Q13163 448 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 RTN1Q16799 776 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 TKFCQ3LXA3 575 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 NOL8Q76FK4 1167 aaKnown RBP13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 NBPF11Q86T75 865 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 CCDC82Q8N4S0 544 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 FANCBQ8NB91 859 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 CHST13Q8NET6 341 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 SH3TC2Q8TF17 1288 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 LZTS2Q9BRK4 669 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 LARP6Q9BRS8 491 aaKnown RBP13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 ACAD9Q9H845 621 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 JMJD4Q9H9V9 463 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 SLC5A4Q9NY91 659 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 ZNF536O15090 1300 aa13.27□□□□□ -0.29
LIMCH1-210ENST00000509454 PLEKHA8P1O95397 391 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 PGK2P07205 417 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 GRK4P32298 578 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 METAP2P50579 478 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 GRB14Q14449 540 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 QRICH1Q2TAL8 776 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 MORN1Q5T089 497 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 NSMFQ6X4W1 530 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 FBXO11Q86XK2 927 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 CMTR1Q8N1G2 835 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 SLAIN1Q8ND83 568 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 RRP36Q96EU6 259 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 MAP3K14Q99558 947 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 APBA2Q99767 749 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 RBM28Q9NW13 759 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 SEC63Q9UGP8 760 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 GJD2Q9UKL4 321 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 PNMA2Q9UL42 364 aa13.26□□□□□ -0.29
LIMCH1-210ENST00000509454 BAZ2BQ9UIF8 2168 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-210ENST00000509454 CCDC85CA6NKD9 419 aa13.25□□□□□ -0.29
LIMCH1-210ENST00000509454 NEK4P51957 841 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms