RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KLRF2D3W0D1 207 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 CCP110O43303 1012 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 SERPINB2P05120 415 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 STAT6P42226 847 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 MEX3CQ5U5Q3 659 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 ZMYND10O75800 440 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 GYS1P13807 737 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 CYP2C19P33261 490 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 MRPS25P82663 173 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 SLC35F6Q8N357 371 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 LRRC15Q8TF66 581 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 PNKPQ96T60 521 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 MXD3Q9BW11 206 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 PDE11AQ9HCR9 933 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 STXBP3O00186 592 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 CALML3P27482 149 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 KCNJ6P48051 423 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 FKBP15Q5T1M5 1219 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 NCAPH2Q6IBW4 605 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 VPS18Q9P253 973 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 GGA1Q9UJY5 639 aa18.62■□□□□ 0.57
CCDC88B-210ENST00000494566 CCDC175P0C221 793 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 CHMP4BP1P59074 171 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 LONRF2Q1L5Z9 754 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 ADD3Q9UEY8 706 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 FRMPD2Q68DX3 1309 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 MYO1BO43795 1136 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 GSTO1P78417 241 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 CDKAL1Q5VV42 579 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 CEP95Q96GE4 821 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 GJD4Q96KN9 370 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 NUP88Q99567 741 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 FLT1P17948 1338 aa18.61■□□□□ 0.57
CCDC88B-210ENST00000494566 STX10O60499 249 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 DHX8Q14562 1220 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 LETM2Q2VYF4 491 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 CAPZA3Q96KX2 299 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 HDAC6Q9UBN7 1215 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 NAV1Q8NEY1 1877 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 NHSQ6T4R5 1651 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 M0R2N6 131 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 N4BP3O15049 544 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 RPN1P04843 607 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 TRAPPC10P48553 1259 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 NAPAP54920 295 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 NAALADL2Q58DX5 795 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 DTHD1Q6ZMT9 781 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 NELFBQ8WX92 580 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 GOLGA1Q92805 767 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 SNED1Q8TER0 1413 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 RGL2O15211 777 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 PRCPP42785 496 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 PPP4CP60510 307 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 GTF2IP78347 998 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 KRT31Q15323 416 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 SEPT12Q8IYM1 358 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 BARHL2Q9NY43 387 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 GUCA1BQ9UMX6 200 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 ADGRG1Q9Y653 693 aa18.6■□□□□ 0.57
CCDC88B-210ENST00000494566 PALM3A6NDB9 673 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 SRGAP2O75044 1071 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 PMS1P54277 932 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 RABEP2Q9H5N1 569 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 MYH8P13535 1937 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 GTPBP6O43824 516 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 LDHCP07864 332 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 CAPN2P17655 700 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 PPARDQ03181 441 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 LRRC47Q8N1G4 583 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 PIGSQ96S52 555 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 CHP1Q99653 195 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 DISC1Q9NRI5 854 aa18.59■□□□□ 0.57
CCDC88B-210ENST00000494566 USP17L5A8MUK1 530 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 KIF5CO60282 957 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 CCNT1O60563 726 aaKnown RBP18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 RHBDL3P58872 404 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 DDR1Q08345 913 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 JAKMIP3Q5VZ66 844 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 TBC1D16Q8TBP0 767 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 CCDC102AQ96A19 550 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 FUT8Q9BYC5 575 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 TMEM51Q9NW97 253 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 TMEM260Q9NX78 707 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 LCMT1Q9UIC8 334 aa18.58■□□□□ 0.57
CCDC88B-210ENST00000494566 PAK1Q13153 545 aa18.58■□□□□ 0.56
CCDC88B-210ENST00000494566 GSPT2Q8IYD1 628 aaKnown RBP18.58■□□□□ 0.56
CCDC88B-210ENST00000494566 BIN2Q9UBW5 565 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-210ENST00000494566 ROBO3Q96MS0 1386 aa18.58■□□□□ 0.56
CCDC88B-210ENST00000494566 CDK5RAP2Q96SN8 1893 aa18.58■□□□□ 0.56
CCDC88B-210ENST00000494566 TRIM66O15016 1216 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 GYPCP04921 128 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 LONP1P36776 959 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 TXLNAP40222 546 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 UBA7P41226 1012 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 NOA1Q8NC60 698 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 UIMC1Q96RL1 719 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 ABCB6Q9NP58 842 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 FAM193AP78312 1265 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 KCTD19Q17RG1 926 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms