RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 JAG1P78504 1218 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 TFF2Q03403 129 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 FAAP100Q0VG06 881 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 MTX1Q13505 466 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 ANKRD1Q15327 319 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 DNTTIP2Q5QJE6 756 aaKnown RBP12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 METTL16Q86W50 562 aaKnown RBP12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 ZNF384Q8TF68 577 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 FEZ1Q99689 392 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 USP44Q9H0E7 712 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 TMEM39AQ9NV64 488 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 SMC3Q9UQE7 1217 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 NDUFB9Q9Y6M9 179 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 IVNS1ABPQ9Y6Y0 642 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 GRXCR1A8MXD5 290 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 KIF20AO95235 890 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 ADCY5O95622 1261 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 TIMP1P01033 207 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 KCNQ1P51787 676 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 FAM193AP78312 1265 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 RAB30Q15771 203 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 ATP2B3Q16720 1220 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 TMEM240Q5SV17 173 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 ANO1Q5XXA6 986 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 SPTY2D1Q68D10 685 aaPredicted RBP12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 MFSD5Q6N075 450 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 CCDC174Q6PII3 467 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L2Q6R6M4 530 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 CCDC129Q6ZRS4 1044 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 C16orf59Q7L2K0 433 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 SLC44A5Q8NCS7 719 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 HERVK_113Q902F9 699 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 SNRKQ9NRH2 765 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 PI4KBQ9UBF8 816 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 PALD1Q9ULE6 856 aa12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 PA2G4Q9UQ80 394 aaKnown RBP12.31□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L15C9J2P7 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L13C9JLJ4 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L11C9JVI0 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L18D6R9N7 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L22D6RA61 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L17D6RBQ6 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L19D6RCP7 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L20D6RJB6 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 STRNO43815 780 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 NEMFO60524 1076 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 POU3F3P20264 500 aaPredicted RBP12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 USP17L24Q0WX57 530 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 FAM47AQ5JRC9 791 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 TAF3Q5VWG9 929 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 KIAA1524Q8TCG1 905 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 RILPL2Q969X0 211 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 LSG1Q9H089 658 aaKnown RBP12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 DHX36Q9H2U1 1008 aaKnown RBP12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 ABCF2Q9UG63 623 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 MSRAQ9UJ68 235 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 TBX21Q9UL17 535 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 EXOC6BQ9Y2D4 811 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 SNX14Q9Y5W7 946 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 A0A0G2JMZ2 1700 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 ROBO3Q96MS0 1386 aa12.3□□□□□ -0.44
PDLIM1-205ENST00000493949 A0A1W2PQ45 241 aaPredicted RBP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 A0A1W2PQY0 241 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PI4K2BG5E9Z4 385 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 CTIFO43310 598 aaKnown RBP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 TLL1O43897 1013 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PQBP1O60828 265 aaKnown RBP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 SYT1P21579 422 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PSMA5P28066 241 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 CDC25BP30305 580 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 KRT85P78386 507 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 MECOMQ03112 1051 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 DMTNQ08495 405 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PPIGQ13427 754 aaKnown RBP eCLIP12.29□□□□□ -0.442e-9■□□□□ 8
PDLIM1-205ENST00000493949 RASGRF1Q13972 1273 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 WDR78Q5VTH9 848 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 CATSPERGQ6ZRH7 1159 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 DPP9Q86TI2 863 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 CREBRFQ8IUR6 639 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 RNF214Q8ND24 703 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PI4K2BQ8TCG2 481 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 FAM200AQ8TCP9 573 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 KHSRPQ92945 711 aaKnown RBP eCLIP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 CHMP4CQ96CF2 233 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 SCAND2PQ9GZW5 306 aaPredicted RBP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 DNAJC18Q9H819 358 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 DDX19AQ9NUU7 478 aaKnown RBP12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 BTBD7Q9P203 1132 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 PRDM4Q9UKN5 801 aa12.29□□□□□ -0.44
PDLIM1-205ENST00000493949 ZNF318Q5VUA4 2279 aa12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 SMIM22K7EJ46 135 aa12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 ADORA2AP29274 412 aa12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 RBM10P98175 930 aaKnown RBP12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 CCDC102BQ68D86 513 aa12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 PSRC1Q6PGN9 363 aaPredicted RBP12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 PI16Q6UXB8 463 aa12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 RBM43Q6ZSC3 357 aaKnown RBP12.28□□□□□ -0.44
PDLIM1-205ENST00000493949 RNF180Q86T96 592 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms