RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 FBXO28Q9NVF7 368 aa23.98■■□□□ 1.43
SND1-214ENST00000489417 SMCO2A6NFE2 343 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 UNCXA6NJT0 531 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 PRPF40AO75400 957 aaKnown RBP23.97■■□□□ 1.43
SND1-214ENST00000489417 GNA11P29992 359 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 CHADLQ6NUI6 762 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 FBXO11Q86XK2 927 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 USP28Q96RU2 1077 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 SLF1Q9BQI6 1058 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 AMNQ9BXJ7 453 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 RANBP17Q9H2T7 1088 aaKnown RBP23.97■■□□□ 1.43
SND1-214ENST00000489417 LMBRD1Q9NUN5 540 aa23.97■■□□□ 1.43
SND1-214ENST00000489417 FKBP1BP68106 108 aa23.96■■□□□ 1.43
SND1-214ENST00000489417 OTUD5Q96G74 571 aa23.96■■□□□ 1.43
SND1-214ENST00000489417 ADAMTS3O15072 1205 aa23.95■■□□□ 1.42
SND1-214ENST00000489417 ADCY7P51828 1080 aa23.95■■□□□ 1.42
SND1-214ENST00000489417 SAMD1Q6SPF0 538 aaPredicted RBP23.95■■□□□ 1.42
SND1-214ENST00000489417 PRPF38AQ8NAV1 312 aaKnown RBP23.95■■□□□ 1.42
SND1-214ENST00000489417 SPATA32Q96LK8 384 aa23.95■■□□□ 1.42
SND1-214ENST00000489417 GBA2Q9HCG7 927 aaPredicted RBP23.95■■□□□ 1.42
SND1-214ENST00000489417 PCDHA1Q9Y5I3 950 aa23.95■■□□□ 1.42
SND1-214ENST00000489417 M0R2N6 131 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 TRAF1Q13077 416 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 PPIL2Q13356 520 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 BICD2Q8TD16 824 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 LEO1Q8WVC0 666 aaPredicted RBP23.94■■□□□ 1.42
SND1-214ENST00000489417 FTOQ9C0B1 505 aaKnown RBP eCLIP23.94■■□□□ 1.42
SND1-214ENST00000489417 RTEL1Q9NZ71 1219 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 TCHHQ07283 1943 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 ELP1O95163 1332 aa23.94■■□□□ 1.42
SND1-214ENST00000489417 CXCL11O14625 94 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 FLOT1O75955 427 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 CELF2O95319 508 aaKnown RBP23.93■■□□□ 1.42
SND1-214ENST00000489417 CEBPZQ03701 1054 aaKnown RBP23.93■■□□□ 1.42
SND1-214ENST00000489417 RILPL1Q5EBL4 403 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 EARS2Q5JPH6 523 aaKnown RBP23.93■■□□□ 1.42
SND1-214ENST00000489417 OPTNQ96CV9 577 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 POLR3EQ9NVU0 708 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 PPP1R9AQ9ULJ8 1098 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 PCDHA6Q9UN73 950 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 PCDHA8Q9Y5H6 950 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 FAM205CA6NFA0 338 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 NOM1Q5C9Z4 860 aaKnown RBP23.93■■□□□ 1.42
SND1-214ENST00000489417 ANO1Q5XXA6 986 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 CCDC174Q6PII3 467 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 C2orf69Q8N8R5 385 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 RASGRP4Q8TDF6 673 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 RIC8AQ9NPQ8 531 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 RCOR1Q9UKL0 485 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 NOL7Q9UMY1 257 aaKnown RBP23.93■■□□□ 1.42
SND1-214ENST00000489417 KCNH4Q9UQ05 1017 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 CLIC4Q9Y696 253 aa23.93■■□□□ 1.42
SND1-214ENST00000489417 A0A0G2JLL6 359 aaPredicted RBP23.92■■□□□ 1.42
SND1-214ENST00000489417 IRF6O14896 467 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 YEATS4O95619 227 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 ITGBL1O95965 494 aaPredicted RBP23.92■■□□□ 1.42
SND1-214ENST00000489417 NASPP49321 788 aaPredicted RBP23.92■■□□□ 1.42
SND1-214ENST00000489417 USH1GQ495M9 461 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 PIK3AP1Q6ZUJ8 805 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 PRRT2Q7Z6L0 340 aaPredicted RBP23.92■■□□□ 1.42
SND1-214ENST00000489417 CUL5Q93034 780 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 SLC10A4Q96EP9 437 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 GLT8D2Q9H1C3 349 aa23.92■■□□□ 1.42
SND1-214ENST00000489417 CCDC194A0A1B0GVG4 234 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L15C9J2P7 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L13C9JLJ4 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L11C9JVI0 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L18D6R9N7 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L22D6RA61 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L17D6RBQ6 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L19D6RCP7 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L20D6RJB6 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 TOB1P50616 345 aaPredicted RBP23.91■■□□□ 1.42
SND1-214ENST00000489417 MRPL12P52815 198 aaKnown RBP23.91■■□□□ 1.42
SND1-214ENST00000489417 USP17L24Q0WX57 530 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 CATSPERGQ6ZRH7 1159 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 KRT25Q7Z3Z0 450 aa23.91■■□□□ 1.42
SND1-214ENST00000489417 REXO1Q8N1G1 1221 aaKnown RBP23.91■■□□□ 1.42
SND1-214ENST00000489417 LOC285556D6RIA3 1793 aa23.9■■□□□ 1.42
SND1-214ENST00000489417 PTPRFP10586 1907 aa23.9■■□□□ 1.42
SND1-214ENST00000489417 FDX1P10109 184 aa23.9■■□□□ 1.42
SND1-214ENST00000489417 STK38Q15208 465 aa23.9■■□□□ 1.42
SND1-214ENST00000489417 PROCA1Q8NCQ7 364 aaPredicted RBP23.9■■□□□ 1.42
SND1-214ENST00000489417 PSTPIP2Q9H939 334 aa23.9■■□□□ 1.42
SND1-214ENST00000489417 GPBP1L1Q9HC44 474 aaPredicted RBP23.9■■□□□ 1.42
SND1-214ENST00000489417 ZBED4O75132 1171 aa23.89■■□□□ 1.41
SND1-214ENST00000489417 SF3A1Q15459 793 aaKnown RBP23.89■■□□□ 1.41
SND1-214ENST00000489417 GADL1Q6ZQY3 521 aa23.89■■□□□ 1.41
SND1-214ENST00000489417 LINC00301Q8NCQ3 95 aa23.89■■□□□ 1.41
SND1-214ENST00000489417 SLC38A10Q9HBR0 1119 aa23.89■■□□□ 1.41
SND1-214ENST00000489417 BIN2Q9UBW5 565 aaPredicted RBP23.89■■□□□ 1.41
SND1-214ENST00000489417 ABCB11O95342 1321 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 GADD45BO75293 160 aaPredicted RBP23.88■■□□□ 1.41
SND1-214ENST00000489417 ICAM1P05362 532 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 TAL1P17542 331 aaPredicted RBP23.88■■□□□ 1.41
SND1-214ENST00000489417 ATP2B1P20020 1258 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 DSG3P32926 999 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 GJA5P36382 358 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 TRAPPC10P48553 1259 aa23.88■■□□□ 1.41
SND1-214ENST00000489417 COG2Q14746 738 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms