RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 FAM86C2PA6NEL3 165 aa6.32□□□□□ -1.4
XRN1-213ENST00000489241 NPIPB6E9PJ23 425 aa6.32□□□□□ -1.4
XRN1-213ENST00000489241 ETV2O00321 342 aaPredicted RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 PPM1GO15355 546 aaPredicted RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 ZSCAN22P10073 491 aaPredicted RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 NCLP19338 710 aaKnown RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 TCEAL1Q15170 157 aa6.32□□□□□ -1.4
XRN1-213ENST00000489241 RNF111Q6ZNA4 994 aa6.32□□□□□ -1.4
XRN1-213ENST00000489241 SMARCC1Q92922 1105 aaPredicted RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 SRPK1Q96SB4 655 aaKnown RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 SUCOQ9UBS9 1254 aaKnown RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 YBX2Q9Y2T7 364 aaKnown RBP6.32□□□□□ -1.4
XRN1-213ENST00000489241 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 FAM221BA6H8Z2 402 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 U2SURPO15042 1029 aaKnown RBP6.31□□□□□ -1.4
XRN1-213ENST00000489241 PMS1P54277 932 aaKnown RBP6.31□□□□□ -1.4
XRN1-213ENST00000489241 SNX17Q15036 470 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 FXNQ16595 210 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 NBPF12Q5TAG4 269 aaPredicted RBP6.31□□□□□ -1.4
XRN1-213ENST00000489241 TMEM192Q8IY95 271 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 LINC01599Q8WXQ3 324 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 MKRN2Q9H000 416 aaKnown RBP6.31□□□□□ -1.4
XRN1-213ENST00000489241 SNTG2Q9NY99 539 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 GPR160Q9UJ42 338 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.31□□□□□ -1.4
XRN1-213ENST00000489241 ZNF281Q9Y2X9 895 aa6.31□□□□□ -1.4
XRN1-213ENST00000489241 RASA3Q14644 834 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 ZYXQ15942 572 aaKnown RBP6.3□□□□□ -1.4
XRN1-213ENST00000489241 GNPTABQ3T906 1256 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 CIAPIN1Q6FI81 312 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 LRP10Q7Z4F1 713 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 CCDC144CPQ8IYA2 1237 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 ZNF655Q8N720 491 aaPredicted RBP6.3□□□□□ -1.4
XRN1-213ENST00000489241 CELF2-AS1Q8N7Q2 184 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 DAGLBQ8NCG7 672 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 KCNN1Q92952 543 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 DEPDC7Q96QD5 511 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 G6PC3Q9BUM1 346 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 EBF1Q9UH73 591 aa6.3□□□□□ -1.4
XRN1-213ENST00000489241 ZNF214Q9UL59 606 aaPredicted RBP6.3□□□□□ -1.4
XRN1-213ENST00000489241 LTBP3Q9NS15 1303 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 PEX10O60683 326 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 SEMA7AO75326 666 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 HSD3B2P26439 372 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 LINC00310P59036 64 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 SLC7A5Q01650 507 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 LARP1BQ659C4 914 aaKnown RBP6.29□□□□□ -1.4
XRN1-213ENST00000489241 VHLLQ6RSH7 139 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 ZNF605Q86T29 641 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 RNPC3Q96LT9 517 aaKnown RBP6.29□□□□□ -1.4
XRN1-213ENST00000489241 MCOLN1Q9GZU1 580 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 SMG5Q9UPR3 1016 aaKnown RBP6.29□□□□□ -1.4
XRN1-213ENST00000489241 MSRB2Q9Y3D2 182 aa6.29□□□□□ -1.4
XRN1-213ENST00000489241 USP2O75604 605 aaPredicted RBP6.28□□□□□ -1.4
XRN1-213ENST00000489241 DDAH1O94760 285 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 CDK11BP21127 795 aaKnown RBP6.28□□□□□ -1.4
XRN1-213ENST00000489241 RPL10P27635 214 aaKnown RBP6.28□□□□□ -1.4
XRN1-213ENST00000489241 PCBP3P57721 371 aaKnown RBP6.28□□□□□ -1.4
XRN1-213ENST00000489241 NCAPHQ15003 741 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 NBPF9Q3BBW0 867 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 ANKRD39Q53RE8 183 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 TMC3Q7Z5M5 1100 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 AMIGO3Q86WK7 504 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 SHISA4Q96DD7 197 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 TCTN2Q96GX1 697 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 ZNF512BQ96KM6 892 aaPredicted RBP6.28□□□□□ -1.4
XRN1-213ENST00000489241 FOXP3Q9BZS1 431 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 FBXL21Q9UKT6 434 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 TCFL5Q9UL49 500 aa6.28□□□□□ -1.4
XRN1-213ENST00000489241 MYOCOSA0A1B0GUC4 107 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 CCDC85CA6NKD9 419 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 NUAK1O60285 661 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 PSPNO60542 156 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 PDE6BP35913 854 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 KIR2DL1P43626 348 aaPredicted RBP6.27□□□□□ -1.41
XRN1-213ENST00000489241 KIR2DL2P43627 348 aaPredicted RBP6.27□□□□□ -1.41
XRN1-213ENST00000489241 KIAA1211LQ6NV74 962 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 WAPLQ7Z5K2 1190 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 FAM178BQ8IXR5 827 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 USHBP1Q8N6Y0 703 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 LINC00116Q8NCU8 138 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 MAP6Q96JE9 813 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 CCDC113Q9H0I3 377 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 ZNF552Q9H707 407 aaPredicted RBP6.27□□□□□ -1.41
XRN1-213ENST00000489241 ST7Q9NRC1 585 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 ZMYM5Q9UJ78 669 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 PCDHB12Q9Y5F1 795 aa6.27□□□□□ -1.41
XRN1-213ENST00000489241 TEX51A0A1B0GUA7 166 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 SSU72P8A0A1W2PR75 194 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 TMEM82A0PJX8 343 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 ENPP3O14638 875 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 SIGLEC6O43699 453 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 PRAMEF1O95521 474 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 TP53P04637 393 aaPredicted RBP6.26□□□□□ -1.41
XRN1-213ENST00000489241 NAT2P11245 290 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 DLG4P78352 724 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 SNW1Q13573 536 aaKnown RBP6.26□□□□□ -1.41
XRN1-213ENST00000489241 AUHQ13825 339 aaKnown RBP6.26□□□□□ -1.41
XRN1-213ENST00000489241 DDR2Q16832 855 aa6.26□□□□□ -1.41
XRN1-213ENST00000489241 NLRX1Q86UT6 975 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms