RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 SSBP05455 408 aaKnown RBP eCLIP7.85□□□□□ -1.15
PTPN4-212ENST00000488896 EPHX1P07099 455 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 CD3EP07766 207 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 RAP1GAPP47736 663 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 KIAA1211LQ6NV74 962 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 STRIP2Q9ULQ0 834 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 SF3B6Q9Y3B4 125 aaKnown RBP7.85□□□□□ -1.15
PTPN4-212ENST00000488896 TAF6LQ9Y6J9 622 aa7.85□□□□□ -1.15
PTPN4-212ENST00000488896 TMEM253P0C7T8 217 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 C1QTNF9P0C862 333 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 ENDOUP21128 410 aaKnown RBP7.84□□□□□ -1.15
PTPN4-212ENST00000488896 HSF5Q4G112 596 aaPredicted RBP7.84□□□□□ -1.15
PTPN4-212ENST00000488896 VHLLQ6RSH7 139 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 IRF2BP1Q8IU81 584 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 KLHL6Q8WZ60 621 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 KCNN1Q92952 543 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 PPP1R16BQ96T49 567 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 GBP3Q9H0R5 595 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 WHRNQ9P202 907 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 SUGT1Q9Y2Z0 365 aa7.84□□□□□ -1.15
PTPN4-212ENST00000488896 NFIBO00712 420 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 IFNGR1P15260 489 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 PRKCAP17252 672 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 NOP2P46087 812 aaKnown RBP7.83□□□□□ -1.16
PTPN4-212ENST00000488896 CASP7P55210 303 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 GNL2Q13823 731 aaKnown RBP7.83□□□□□ -1.16
PTPN4-212ENST00000488896 TMEM132EQ6IEE7 984 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 GALNT18Q6P9A2 607 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 TMEM52Q8NDY8 209 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 FCRL3Q96P31 734 aaPredicted RBP7.83□□□□□ -1.16
PTPN4-212ENST00000488896 KLHL25Q9H0H3 589 aa7.83□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQ27 194 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQ64 194 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQC6 194 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQD8 194 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 OR14I1A6ND48 311 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 WTIPA6NIX2 430 aaPredicted RBP7.82□□□□□ -1.16
PTPN4-212ENST00000488896 SMAD7O15105 426 aaKnown RBP7.82□□□□□ -1.16
PTPN4-212ENST00000488896 VAMP4O75379 141 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 PPM1BO75688 479 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 POU4F1Q01851 419 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 DPY19L1Q2PZI1 675 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 SLCO6A1Q86UG4 719 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 JAMLQ86YT9 394 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 NUP43Q8NFH3 380 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 SLC26A8Q96RN1 970 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 JMJD8Q96S16 334 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.82□□□□□ -1.16
PTPN4-212ENST00000488896 IMPACTQ9P2X3 320 aa7.82□□□□□ -1.16
PTPN4-212ENST00000488896 DIS3Q9Y2L1 958 aaKnown RBP7.82□□□□□ -1.16
PTPN4-212ENST00000488896 DBX1A6NMT0 343 aa7.81□□□□□ -1.16
PTPN4-212ENST00000488896 ETV2O00321 342 aaPredicted RBP7.81□□□□□ -1.16
PTPN4-212ENST00000488896 CEBPAP49715 358 aaPredicted RBP7.81□□□□□ -1.16
PTPN4-212ENST00000488896 ATG14Q6ZNE5 492 aa7.81□□□□□ -1.16
PTPN4-212ENST00000488896 PPP1R14AQ96A00 147 aa7.81□□□□□ -1.16
PTPN4-212ENST00000488896 MCOLN1Q9GZU1 580 aa7.81□□□□□ -1.16
PTPN4-212ENST00000488896 CRTAC1Q9NQ79 661 aa7.81□□□□□ -1.16
PTPN4-212ENST00000488896 A0A087WZG4 1122 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 MYOCOSA0A1B0GUC4 107 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQ45 241 aaPredicted RBP7.8□□□□□ -1.16
PTPN4-212ENST00000488896 A0A1W2PQY0 241 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 STXBP3O00186 592 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 TSPAN15O95858 294 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 PNLIPP16233 465 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 JAG1P78504 1218 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 FZD5Q13467 585 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 LARP1BQ659C4 914 aaKnown RBP7.8□□□□□ -1.16
PTPN4-212ENST00000488896 ANKLE2Q86XL3 938 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 SGPP1Q9BX95 441 aa7.8□□□□□ -1.16
PTPN4-212ENST00000488896 ZNF552Q9H707 407 aaPredicted RBP7.8□□□□□ -1.16
PTPN4-212ENST00000488896 CGGBP1Q9UFW8 167 aaPredicted RBP7.8□□□□□ -1.16
PTPN4-212ENST00000488896 TCAF2A6NFQ2 919 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 FGF10O15520 208 aaPredicted RBP7.79□□□□□ -1.16
PTPN4-212ENST00000488896 KRT1P04264 644 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 DNAJA1P31689 397 aaKnown RBP7.79□□□□□ -1.16
PTPN4-212ENST00000488896 ETFBP38117 255 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 CYP4F8P98187 520 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 HLA-DQA1Q5Y7H0 255 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 BHLHE22Q8NFJ8 381 aaPredicted RBP7.79□□□□□ -1.16
PTPN4-212ENST00000488896 PTCHD1Q96NR3 888 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 MCMBPQ9BTE3 642 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 ACTR10Q9NZ32 417 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 APEX2Q9UBZ4 518 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 SUSD2Q9UGT4 822 aa7.79□□□□□ -1.16
PTPN4-212ENST00000488896 ANKRD34BA5PLL1 514 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 NPIPB6E9PJ23 425 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 E9PSI1 815 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 ARL4AP40617 200 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 TINF2Q9BSI4 451 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 AKT3Q9Y243 479 aa7.78□□□□□ -1.16
PTPN4-212ENST00000488896 NUDT19A8MXV4 375 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 SRSF3P84103 164 aaKnown RBP7.77□□□□□ -1.17
PTPN4-212ENST00000488896 AMPD2Q01433 879 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 ARID5AQ03989 594 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 C6orf15Q6UXA7 325 aaPredicted RBP7.77□□□□□ -1.17
PTPN4-212ENST00000488896 CYP2R1Q6VVX0 501 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 APBA2Q99767 749 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 LGR4Q9BXB1 951 aa7.77□□□□□ -1.17
PTPN4-212ENST00000488896 A0A1W2PQJ5 194 aa7.76□□□□□ -1.17
PTPN4-212ENST00000488896 B2RBV5 119 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms