RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ECHDC1	Q9NTX5	307 aa		10.49	□□□□□ -0.73
USP4-213	ENST00000488520	MYH4	Q9Y623	1939 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L15	C9J2P7	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L13	C9JLJ4	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L11	C9JVI0	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L18	D6R9N7	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L22	D6RA61	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L17	D6RBQ6	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L19	D6RCP7	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L20	D6RJB6	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	CD2BP2	O95400	341 aa	Known RBP	10.48	□□□□□ -0.73
USP4-213	ENST00000488520	HLA-DOA	P06340	250 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	ZAP70	P43403	619 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	ATP2B2	Q01814	1243 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L24	Q0WX57	530 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	RAB3GAP1	Q15042	981 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	MFSD14C	Q5VZR4	134 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	ANO1	Q5XXA6	986 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520		Q6ZNB5	142 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	METTL16	Q86W50	562 aa	Known RBP	10.48	□□□□□ -0.73
USP4-213	ENST00000488520	NPLOC4	Q8TAT6	608 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.48	□□□□□ -0.73
USP4-213	ENST00000488520	KDM4C	Q9H3R0	1056 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	DDX20	Q9UHI6	824 aa	Known RBP	10.48	□□□□□ -0.73
USP4-213	ENST00000488520	ATP11B	Q9Y2G3	1177 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	RABGAP1	Q9Y3P9	1069 aa		10.48	□□□□□ -0.73
USP4-213	ENST00000488520	TCF20	Q9UGU0	1960 aa	Known RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	GLRX3	O76003	335 aa	Known RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	MX1	P20591	662 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	CYP7A1	P22680	504 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	CYP2C19	P33261	490 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	USP5	P45974	858 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	RTP1	P59025	263 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	CCNA1	P78396	465 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	TTF1	Q15361	905 aa	Predicted RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	GJC2	Q5T442	439 aa	Predicted RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	CATSPERG	Q6ZRH7	1159 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	TRIM67	Q6ZTA4	783 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	MIGA1	Q8NAN2	632 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	PRR7	Q8TB68	274 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	ACER1	Q8TDN7	264 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	ZNF512B	Q96KM6	892 aa	Predicted RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	BOLA2	Q9H3K6	86 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	PIH1D3	Q9NQM4	214 aa	Known RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	GINM1	Q9NU53	330 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	BTBD7	Q9P203	1132 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	PRKAG2	Q9UGJ0	569 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	DBNL	Q9UJU6	430 aa	Known RBP	10.47	□□□□□ -0.73
USP4-213	ENST00000488520	GTF3C3	Q9Y5Q9	886 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	IVNS1ABP	Q9Y6Y0	642 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	TTC41P	Q6P2S7	1318 aa		10.47	□□□□□ -0.73
USP4-213	ENST00000488520	SLC15A5	A6NIM6	579 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	ATP5J	P18859	108 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRR20E	P86478	221 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRR20C	P86479	221 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRR20D	P86480	221 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRR20B	P86481	221 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRR20A	P86496	221 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	SHH	Q15465	462 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.46	□□□□□ -0.73
USP4-213	ENST00000488520	TRPV1	Q8NER1	839 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	LPAR1	Q92633	364 aa		10.46	□□□□□ -0.73
USP4-213	ENST00000488520	DNAJC2	Q99543	621 aa	Known RBP	10.46	□□□□□ -0.73
USP4-213	ENST00000488520	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.46	□□□□□ -0.73
USP4-213	ENST00000488520	GDF9	O60383	454 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	IDH1	O75874	414 aa	Known RBP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	VCAM1	P19320	739 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	USP14	P54578	494 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	ABCB5	Q2M3G0	1257 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	CERKL	Q49MI3	558 aa	Predicted RBP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	C9orf50	Q5SZB4	431 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	ZSCAN25	Q6NSZ9	544 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	TATDN1	Q6P1N9	297 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	DPP9	Q86TI2	863 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	C12orf42	Q96LP6	360 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	CDX2	Q99626	313 aa	Predicted RBP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	RPAP3	Q9H6T3	665 aa	Predicted RBP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	TLR7	Q9NYK1	1049 aa	Known RBP	10.45	□□□□□ -0.74
USP4-213	ENST00000488520	LIMD1	Q9UGP4	676 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	SERPINB13	Q9UIV8	391 aa		10.45	□□□□□ -0.74
USP4-213	ENST00000488520	DNM1L	O00429	736 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	MSC	O60682	206 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	PDE1A	P54750	535 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	MAP3K12	Q12852	859 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	GRB14	Q14449	540 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	CSPP1	Q1MSJ5	1256 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	TUSC1	Q2TAM9	212 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	PRAMEF19	Q5SWL8	479 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	DESI1	Q6ICB0	168 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	SLC39A5	Q6ZMH5	540 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	MAGEB6	Q8N7X4	407 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	MYLIP	Q8WY64	445 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	BAD	Q92934	168 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	FERMT2	Q96AC1	680 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	DDRGK1	Q96HY6	314 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.44	□□□□□ -0.74	8e-8	■■■■□ 25
USP4-213	ENST00000488520	SEMA6B	Q9H3T3	888 aa		10.44	□□□□□ -0.74
USP4-213	ENST00000488520	CABP5	Q9NP86	173 aa		10.44	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms