RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMC4Q7Z404 712 aa6.5□□□□□ -1.37
SMC4-220ENST00000488017 MATN3O15232 486 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 CLEC3AO75596 197 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 GARTP22102 1010 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 FAM160A1Q05DH4 1040 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 CWF19L2Q2TBE0 894 aaKnown RBP6.49□□□□□ -1.37
SMC4-220ENST00000488017 AEBP1Q8IUX7 1158 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 FBXO27Q8NI29 283 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 CDADC1Q9BWV3 514 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 LRRC3Q9BY71 257 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 CNNM2Q9H8M5 875 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 PRR13Q9NZ81 148 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 IMPACTQ9P2X3 320 aa6.49□□□□□ -1.37
SMC4-220ENST00000488017 ANKRD33BA6NCL7 494 aa6.48□□□□□ -1.37
SMC4-220ENST00000488017 MAGEA10P43363 369 aaPredicted RBP6.48□□□□□ -1.37
SMC4-220ENST00000488017 XPCQ01831 940 aaPredicted RBP6.48□□□□□ -1.37
SMC4-220ENST00000488017 VWA3BQ502W6 1294 aa6.48□□□□□ -1.37
SMC4-220ENST00000488017 UBXN11Q5T124 520 aa6.48□□□□□ -1.37
SMC4-220ENST00000488017 USP40Q9NVE5 1235 aa6.48□□□□□ -1.37
SMC4-220ENST00000488017 PCDHB14Q9Y5E9 798 aa6.48□□□□□ -1.37
SMC4-220ENST00000488017 FSHBP01225 129 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 MSL3P1P0C860 447 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 VAV1P15498 845 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 LIMS1P48059 325 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 ZNF200P98182 395 aaPredicted RBP6.47□□□□□ -1.37
SMC4-220ENST00000488017 OVOS1Q6IE37 1185 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 LIPIQ6XZB0 460 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 JMJD8Q96S16 334 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 MENTQ9BUN1 341 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 MINPP1Q9UNW1 487 aa6.47□□□□□ -1.37
SMC4-220ENST00000488017 MINDY4BA8MYZ0 360 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 PATL2C9JE40 543 aaKnown RBP6.46□□□□□ -1.38
SMC4-220ENST00000488017 SRGAP3O43295 1099 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 FBLN1P23142 703 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 POLR2BP30876 1174 aaKnown RBP6.46□□□□□ -1.38
SMC4-220ENST00000488017 CTSKP43235 329 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 HMGA2P52926 109 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 PAQR3Q6TCH7 311 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 TMEM52Q8NDY8 209 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 EHMT1Q9H9B1 1298 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 BRMS1Q9HCU9 246 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 KCNQ5Q9NR82 932 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 SUSD2Q9UGT4 822 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 PCDHB12Q9Y5F1 795 aa6.46□□□□□ -1.38
SMC4-220ENST00000488017 A0A1W2PQ27 194 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 A0A1W2PQ64 194 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 A0A1W2PQC6 194 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 A0A1W2PQD8 194 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 SH3D21A4FU49 640 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 TLR3O15455 904 aaKnown RBP6.45□□□□□ -1.38
SMC4-220ENST00000488017 CYBBP04839 570 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 FOXO4P98177 505 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 MVKQ03426 396 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 NT5DC1Q5TFE4 455 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 NLRC3Q7RTR2 1065 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 SAPCD2Q86UD0 394 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 FNIP1Q8TF40 1166 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 ATG4CQ96DT6 458 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 RNF38Q9H0F5 515 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 AP5S1Q9NUS5 200 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 GFOD1Q9NXC2 390 aa6.45□□□□□ -1.38
SMC4-220ENST00000488017 MEIS1O00470 390 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 PLA2G1BP04054 148 aaKnown RBP6.44□□□□□ -1.38
SMC4-220ENST00000488017 GSNP06396 782 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 ADAM17P78536 824 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 HTRA3P83110 453 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 HLA-DQA1Q5Y7H0 255 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 ZNF512BQ96KM6 892 aaPredicted RBP6.44□□□□□ -1.38
SMC4-220ENST00000488017 MKRN2Q9H000 416 aaKnown RBP6.44□□□□□ -1.38
SMC4-220ENST00000488017 FBXL21Q9UKT6 434 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 PMF1-BGLAPU3KQ54 211 aa6.44□□□□□ -1.38
SMC4-220ENST00000488017 GREM1O60565 184 aa6.43□□□□□ -1.38
SMC4-220ENST00000488017 DBHP09172 617 aa6.43□□□□□ -1.38
SMC4-220ENST00000488017 RTP2Q5QGT7 225 aa6.43□□□□□ -1.38
SMC4-220ENST00000488017 LSRQ86X29 649 aaPredicted RBP6.43□□□□□ -1.38
SMC4-220ENST00000488017 SPATA25Q9BR10 227 aa6.43□□□□□ -1.38
SMC4-220ENST00000488017 SUPT16HQ9Y5B9 1047 aaKnown RBP6.43□□□□□ -1.38
SMC4-220ENST00000488017 C1QTNF3-AMACRE9PGA6 284 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 SORBS3O60504 671 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 ITGAEP38570 1179 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 AUHQ13825 339 aaKnown RBP6.42□□□□□ -1.38
SMC4-220ENST00000488017 LRRFIP1Q32MZ4 808 aaKnown RBP6.42□□□□□ -1.38
SMC4-220ENST00000488017 FBXL19Q6PCT2 694 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 CRTC3Q6UUV7 619 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 FERMT3Q86UX7 667 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 TMEM192Q8IY95 271 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 NAT16Q8N8M0 369 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 FAM161BQ96MY7 647 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 FAN1Q9Y2M0 1017 aa6.42□□□□□ -1.38
SMC4-220ENST00000488017 TNFRSF10CO14798 259 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 ATF2P15336 505 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 NME1P15531 152 aaKnown RBP6.41□□□□□ -1.38
SMC4-220ENST00000488017 CYP2R1Q6VVX0 501 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 ERMP1Q7Z2K6 904 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 JAMLQ86YT9 394 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 ADGRG2Q8IZP9 1017 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 REXO1Q8N1G1 1221 aaKnown RBP6.41□□□□□ -1.38
SMC4-220ENST00000488017 SRRTQ9BXP5 876 aaKnown RBP6.41□□□□□ -1.38
SMC4-220ENST00000488017 ANTXR1Q9H6X2 564 aa6.41□□□□□ -1.38
SMC4-220ENST00000488017 PDLIM7Q9NR12 457 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms