RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ARFGAP3Q9NP61 516 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 BARHL2Q9NY43 387 aa20.2■□□□□ 0.82
VIM-206ENST00000487938 KLRC4O43908 158 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 BAG3O95817 575 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 RTCBQ9Y3I0 505 aaKnown RBP20.19■□□□□ 0.82
VIM-206ENST00000487938 TTC26A0AVF1 554 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 KLRF2D3W0D1 207 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 ARHGAP25P42331 645 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 MB21D1Q8N884 522 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 CCDC148Q8NFR7 591 aa20.19■□□□□ 0.82
VIM-206ENST00000487938 ZCCHC17Q9NP64 241 aaKnown RBP20.19■□□□□ 0.82
VIM-206ENST00000487938 PALM3A6NDB9 673 aaPredicted RBP20.18■□□□□ 0.82
VIM-206ENST00000487938 ERICH4A6NGS2 130 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 UBAP1LF5GYI3 381 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 RASA1P20936 1047 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 VAT1LQ9HCJ6 419 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 TRIM14Q14142 442 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 FNBP4Q8N3X1 1017 aaPredicted RBP20.18■□□□□ 0.82
VIM-206ENST00000487938 TRIM47Q96LD4 638 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 TCP11L1Q9NUJ3 509 aa20.18■□□□□ 0.82
VIM-206ENST00000487938 ATP8B1O43520 1251 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 LETM2Q2VYF4 491 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 CEP112Q8N8E3 955 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 DAGLBQ8NCG7 672 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 CCSER1Q9C0I3 900 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 KBTBD4Q9NVX7 518 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 TRIM10Q9UDY6 481 aa20.17■□□□□ 0.82
VIM-206ENST00000487938 CCNL1Q9UK58 526 aaPredicted RBP20.17■□□□□ 0.82
VIM-206ENST00000487938 EPN1Q9Y6I3 576 aaPredicted RBP20.17■□□□□ 0.82
VIM-206ENST00000487938 CCNT1O60563 726 aaKnown RBP20.16■□□□□ 0.82
VIM-206ENST00000487938 NAPAP54920 295 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 GSTO1P78417 241 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 KCNB1Q14721 858 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 CCDC178Q5BJE1 867 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 ZBTB9Q96C00 473 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 FUT8Q9BYC5 575 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 ANKZF1Q9H8Y5 726 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 TFR2Q9UP52 801 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 PLCG1P19174 1290 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 TMED8Q6PL24 325 aaPredicted RBP20.16■□□□□ 0.82
VIM-206ENST00000487938 USP17L2Q6R6M4 530 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 GIMAP8Q8ND71 665 aaPredicted RBP20.16■□□□□ 0.82
VIM-206ENST00000487938 NAPGQ99747 312 aaPredicted RBP20.16■□□□□ 0.82
VIM-206ENST00000487938 GUCA1BQ9UMX6 200 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 LEMD3Q9Y2U8 911 aa20.16■□□□□ 0.82
VIM-206ENST00000487938 REXO2Q9Y3B8 237 aaKnown RBP20.16■□□□□ 0.82
VIM-206ENST00000487938 SMCO2A6NFE2 343 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 RHOBTB3O94955 611 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 PPP4CP60510 307 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 STIM1Q13586 685 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 SMC1AQ14683 1233 aaKnown RBP20.15■□□□□ 0.82
VIM-206ENST00000487938 TXNRD1Q16881 649 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 LONRF2Q1L5Z9 754 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 GALNT17Q6IS24 598 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 CABP7Q86V35 215 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 OR8K1Q8NGG5 319 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 ZNF507Q8TCN5 953 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 LUC7L2Q9Y383 392 aaKnown RBP20.15■□□□□ 0.82
VIM-206ENST00000487938 MAST2Q6P0Q8 1798 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 LGALS16A8MUM7 142 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 PSMA7O14818 248 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 NDUFA10O95299 355 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 CDK8P49336 464 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 GRAPQ13588 217 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 GRAPLQ8TC17 118 aaPredicted RBP20.15■□□□□ 0.82
VIM-206ENST00000487938 EYA3Q99504 573 aa20.15■□□□□ 0.82
VIM-206ENST00000487938 MAGEC2Q9UBF1 373 aaPredicted RBP20.15■□□□□ 0.82
VIM-206ENST00000487938 ROBO3Q96MS0 1386 aa20.14■□□□□ 0.82
VIM-206ENST00000487938 B4DLN1 442 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 OAS2P29728 719 aaKnown RBP20.14■□□□□ 0.81
VIM-206ENST00000487938 TECP42680 631 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 BTDP43251 543 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 TTI2Q6NXR4 508 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 PNKPQ96T60 521 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 RTFDC1Q9BY42 306 aaPredicted RBP20.14■□□□□ 0.81
VIM-206ENST00000487938 UBXN6Q9BZV1 441 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 THAP9Q9H5L6 903 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 USP21Q9UK80 565 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 LDHCP07864 332 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 RHOXF2BP0C7M4 288 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 EEF1GP26641 437 aaKnown RBP20.14■□□□□ 0.81
VIM-206ENST00000487938 RFC4P35249 363 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 ZNF804AQ7Z570 1209 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 CSGALNACT2Q8N6G5 542 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 DUSP9Q99956 384 aaKnown RBP20.14■□□□□ 0.81
VIM-206ENST00000487938 RHOXF2Q9BQY4 288 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 ZMYND12Q9H0C1 365 aa20.14■□□□□ 0.81
VIM-206ENST00000487938 CCDC151A5D8V7 595 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 OR52Z1P0C646 297 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 KLK7P49862 253 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 PDE4DQ08499 809 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 JAKMIP3Q5VZ66 844 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 WDR59Q6PJI9 974 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 FLT1P17948 1338 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 LAD1O00515 517 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 FCER1AP12319 257 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 PRPHP41219 470 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 STK4Q13043 487 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 BRD3Q15059 726 aa20.13■□□□□ 0.81
VIM-206ENST00000487938 NONOQ15233 471 aaKnown RBP eCLIP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms