RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NUP133Q8WUM0 1156 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 INCENPQ9NQS7 918 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 IL17RBQ9NRM6 502 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 TOMM22Q9NS69 142 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 RNF146Q9NTX7 359 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 MTMR10Q9NXD2 777 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 TACC3Q9Y6A5 838 aa23.38■■□□□ 1.33
COL9A3-210ENST00000472880 A0A0D9SFI3 127 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 TRIM43BA6NCK2 446 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 MOXD2PA6NHM9 499 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 ORC4O43929 436 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 PLA2G6O60733 806 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 PQBP1O60828 265 aaKnown RBP23.37■■□□□ 1.33
COL9A3-210ENST00000472880 DUSP11O75319 330 aaKnown RBP23.37■■□□□ 1.33
COL9A3-210ENST00000472880 ACLYP53396 1101 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 ALX1Q15699 326 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 TKFCQ3LXA3 575 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 SLC17A8Q8NDX2 589 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 TRIM43Q96BQ3 446 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-210ENST00000472880 FAM227BQ96M60 508 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 FGD4Q96M96 766 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 AGBL1Q96MI9 1066 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 STARD7Q9NQZ5 370 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 MTMR7Q9Y216 660 aa23.37■■□□□ 1.33
COL9A3-210ENST00000472880 ZNF536O15090 1300 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 POTEB2H3BUK9 544 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 CCDC96Q2M329 555 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 MCMDC2Q4G0Z9 681 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 RCSD1Q6JBY9 416 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 TICAM2Q86XR7 235 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 LNPKQ9C0E8 428 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 SPC25Q9HBM1 224 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 A1CFQ9NQ94 594 aaKnown RBP23.36■■□□□ 1.33
COL9A3-210ENST00000472880 MCM3APO60318 1980 aa23.36■■□□□ 1.33
COL9A3-210ENST00000472880 TRIM6-TRIM34B2RNG4 842 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 C6orf222P0C671 652 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-210ENST00000472880 ALAS1P13196 640 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 AAMPQ13685 434 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 SHHQ15465 462 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 CCDC144BQ3MJ40 725 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 RRP12Q5JTH9 1297 aaKnown RBP23.35■■□□□ 1.33
COL9A3-210ENST00000472880 CCDC174Q6PII3 467 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 RASGRP2Q7LDG7 609 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 CCDC144CPQ8IYA2 1237 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 KLHDC9Q8NEP7 349 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 TRERF1Q96PN7 1200 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 STXBP5LQ9Y2K9 1186 aa23.35■■□□□ 1.33
COL9A3-210ENST00000472880 CST5P28325 142 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-210ENST00000472880 CNTN2Q02246 1040 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 KCNA10Q16322 511 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 C9orf50Q5SZB4 431 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 FAM133AQ8N9E0 248 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 PCSK9Q8NBP7 692 aaKnown RBP23.34■■□□□ 1.33
COL9A3-210ENST00000472880 DCAF4Q8WV16 495 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 PRR12Q9ULL5 1215 aa23.34■■□□□ 1.33
COL9A3-210ENST00000472880 ZMYM6O95789 1325 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 MYADML2A6NDP7 307 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 DCDC2CA8MYV0 355 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 ADCY6O43306 1168 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 FGAP02671 866 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 FGRP09769 529 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 RAG1P15918 1043 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 NMIQ13287 307 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-210ENST00000472880 FAM109BQ6ICB4 259 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-210ENST00000472880 RILPL2Q969X0 211 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 GLT1D1Q96MS3 346 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 TMEM39AQ9NV64 488 aa23.33■■□□□ 1.33
COL9A3-210ENST00000472880 ASB14A6NK59 587 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 KIAA0355O15063 1070 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 HSPD1P10809 573 aaKnown RBP23.32■■□□□ 1.32
COL9A3-210ENST00000472880 NOVP48745 357 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 SNAP25P60880 206 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 CCSAPQ6IQ19 270 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-210ENST00000472880 ANKRD33Q7Z3H0 272 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 ZNF589Q86UQ0 364 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-210ENST00000472880 UPF3AQ9H1J1 476 aaKnown RBP23.32■■□□□ 1.32
COL9A3-210ENST00000472880 RWDD1Q9H446 243 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-210ENST00000472880 CCPG1Q9ULG6 757 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 LRRC37A2A6NM11 1700 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 CCDC171Q6TFL3 1326 aa23.32■■□□□ 1.32
COL9A3-210ENST00000472880 TOP1P11387 765 aaKnown RBP23.31■■□□□ 1.32
COL9A3-210ENST00000472880 GJA9P57773 515 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 ZNF697Q5TEC3 545 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 TOX2Q96NM4 488 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 KATNBL1Q9H079 304 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 ELP1O95163 1332 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 MROH7Q68CQ1 1323 aa23.31■■□□□ 1.32
COL9A3-210ENST00000472880 SOWAHBA6NEL2 793 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 ASGR1P07306 291 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 ITGB8P26012 769 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 MFAP1P55081 439 aaKnown RBP23.3■■□□□ 1.32
COL9A3-210ENST00000472880 HAND2P61296 217 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 IRX5P78411 483 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-210ENST00000472880 MUM1L1Q5H9M0 696 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 B4GALNT3Q6L9W6 998 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 NOL8Q76FK4 1167 aaKnown RBP23.3■■□□□ 1.32
COL9A3-210ENST00000472880 SMC5Q8IY18 1101 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 VTI1AQ96AJ9 217 aa23.3■■□□□ 1.32
COL9A3-210ENST00000472880 ICAM1P05362 532 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 TNFAIP2Q03169 654 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms