RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CHURC1Q8WUH1 139 aa18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 FERMT2Q96AC1 680 aa18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 HOMER2Q9NSB8 354 aa18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 DIS3Q9Y2L1 958 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-205ENST00000472524 TAL1P17542 331 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 OAZ1P54368 228 aa18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 SNX17Q15036 470 aa18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 CCDC96Q2M329 555 aa18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 STAG1Q8WVM7 1258 aa18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 PRDM5Q9NQX1 630 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-205ENST00000472524 POTEB2H3BUK9 544 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 FDX1P10109 184 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 SNAP25P60880 206 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 RCSD1Q6JBY9 416 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 SH3RF1Q7Z6J0 888 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 TBC1D10CQ8IV04 446 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 ANKRD35Q8N283 1001 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 XPNPEP3Q9NQH7 507 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 MYH6P13533 1939 aa18.55■□□□□ 0.56
CCDC88B-205ENST00000472524 DNAJC25-GNG10A0A024R161 153 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 HIP1O00291 1037 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 PGK1P00558 417 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 PDE4AP27815 886 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 SHHQ15465 462 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 C9orf50Q5SZB4 431 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 AKNAD1Q5T1N1 836 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 CCDC174Q6PII3 467 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 MFSD6Q6ZSS7 791 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 CHST13Q8NET6 341 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 DCAF4Q8WV16 495 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 BADQ92934 168 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 LENG1Q96BZ8 264 aaPredicted RBP18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 AGBL1Q96MI9 1066 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 FAM161BQ96MY7 647 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 GUCD1Q96NT3 240 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 PDLIM7Q9NR12 457 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 FBXO40Q9UH90 709 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 NRBP1Q9UHY1 535 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 CNPY2Q9Y2B0 182 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 LCTP09848 1927 aa18.54■□□□□ 0.56
CCDC88B-205ENST00000472524 TRIM43BA6NCK2 446 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 RARBP10826 455 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 TOP1P11387 765 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 NOVP48745 357 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 FAM109BQ6ICB4 259 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 TRIM43Q96BQ3 446 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 TMEM47Q9BQJ4 181 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 RNF146Q9NTX7 359 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 PRR12Q9ULL5 1215 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 PHF24Q9UPV7 400 aa18.53■□□□□ 0.56
CCDC88B-205ENST00000472524 ZNF536O15090 1300 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 NEDD4P46934 1319 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 SYNGAP1Q96PV0 1343 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 ZNF213O14771 459 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 PLA2G6O60733 806 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 ZNF865P0CJ78 1059 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 PCP11498 1178 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 ALAS1P13196 640 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 TLE2Q04725 743 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 MSL3Q8N5Y2 521 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 RNF41Q9H4P4 317 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 ACAD9Q9H845 621 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 TCP11L1Q9NUJ3 509 aa18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 ZHX1Q9UKY1 873 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-205ENST00000472524 FRMPD2Q68DX3 1309 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 AKR1A1P14550 325 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 ITGB8P26012 769 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 SLC16A2P36021 539 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 C1orf53Q5VUE5 145 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 TTBK2Q6IQ55 1244 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 GPCPD1Q9NPB8 672 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 UNC80Q8N2C7 3258 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 LRRC37A2A6NM11 1700 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 LTBP2Q14767 1821 aa18.51■□□□□ 0.55
CCDC88B-205ENST00000472524 SNAI1O95863 264 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 GSPT1P15170 499 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 TKFCQ3LXA3 575 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 TTC22Q5TAA0 569 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 MAMDC4Q6UXC1 1216 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 ZNF467Q7Z7K2 595 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 RNF180Q86T96 592 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 ESR2Q92731 530 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 FGD4Q96M96 766 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 TRERF1Q96PN7 1200 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 ZKSCAN3Q9BRR0 538 aa18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 A1CFQ9NQ94 594 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-205ENST00000472524 CNTN2Q02246 1040 aa18.49■□□□□ 0.55
CCDC88B-205ENST00000472524 ZNF697Q5TEC3 545 aa18.49■□□□□ 0.55
CCDC88B-205ENST00000472524 SYDE2Q5VT97 1194 aa18.49■□□□□ 0.55
CCDC88B-205ENST00000472524 DSCC1Q9BVC3 393 aa18.49■□□□□ 0.55
CCDC88B-205ENST00000472524 CCPG1Q9ULG6 757 aa18.49■□□□□ 0.55
CCDC88B-205ENST00000472524 A0A1W2PQ45 241 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 A0A1W2PQY0 241 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 PQBP1O60828 265 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 ADAMTS4O75173 837 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 PDHBP11177 359 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 ACVR2BQ13705 512 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 MUM1L1Q5H9M0 696 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms