RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	VAV1	P15498	845 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	ENDOU	P21128	410 aa	Known RBP	5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	GRIA2	P42262	883 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	PCBP3	P57721	371 aa	Known RBP	5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	MAP4K2	Q12851	820 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	AOC3	Q16853	763 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	FOXB2	Q5VYV0	432 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	CRTC3	Q6UUV7	619 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	RNF111	Q6ZNA4	994 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	STK11IP	Q8N1F8	1099 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	BTN2A2	Q8WVV5	523 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	COPS5	Q92905	334 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	EXOC2	Q96KP1	924 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	FCRL3	Q96P31	734 aa	Predicted RBP	5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	MCMBP	Q9BTE3	642 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	DHRS4	Q9BTZ2	278 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	SLC12A9	Q9BXP2	914 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	FANCL	Q9NW38	375 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	LMCD1	Q9NZU5	365 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	DUSP13	Q9UII6	198 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	DNAJC25-GNG10	A0A024R161	153 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	MEIS1	O00470	390 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	CDC45	O75419	566 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	PABPC1	P11940	636 aa	Known RBP	5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	GFRA1	P56159	465 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	CYP4F3	Q08477	520 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	NSMF	Q6X4W1	530 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	C16orf86	Q6ZW13	317 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	DTX1	Q86Y01	620 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	BCL7C	Q8WUZ0	217 aa	Predicted RBP	5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	KCTD13	Q8WZ19	329 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	OSBP2	Q969R2	916 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	ATP13A1	Q9HD20	1204 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	TCFL5	Q9UL49	500 aa		5.65	□□□□□ -1.5
PTCD3-209	ENST00000472044	TRBV23-1	A0A0A0MS06	115 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	DLX3	O60479	287 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	CLSTN1	O94985	981 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	SYP	P08247	313 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	SPINK2	P20155	84 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	CD97	P48960	835 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	TEK	Q02763	1124 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	TCEA2	Q15560	299 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	TESK1	Q15569	626 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	FAM209A	Q5JX71	171 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	RTP2	Q5QGT7	225 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	YOD1	Q5VVQ6	348 aa	Predicted RBP	5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	RCSD1	Q6JBY9	416 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	C1orf159	Q96HA4	380 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	IPO9	Q96P70	1041 aa	Known RBP	5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	CDC6	Q99741	560 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	IER2	Q9BTL4	223 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	FOXP3	Q9BZS1	431 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	GPR55	Q9Y2T6	319 aa	Predicted RBP	5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	MRPS23	Q9Y3D9	190 aa	Known RBP	5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	PCDHA11	Q9Y5I1	949 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	BACE2	Q9Y5Z0	518 aa		5.64	□□□□□ -1.51
PTCD3-209	ENST00000472044	C2orf71	A6NGG8	1288 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	PRODH	O43272	600 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	MED26	O95402	600 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	CD3E	P07766	207 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	LTK	P29376	864 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	L1CAM	P32004	1257 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	SUMO1	P63165	101 aa	Known RBP	5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	SF1	Q15637	639 aa	Known RBP	5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	DPY19L1	Q2PZI1	675 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	SLC35F1	Q5T1Q4	408 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	EEF1DP3	Q658K8	133 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	WFDC3	Q8IUB2	231 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	CREG2	Q8IUH2	290 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	KREMEN2	Q8NCW0	462 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	FEZ1	Q99689	392 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	SLC5A6	Q9Y289	635 aa		5.63	□□□□□ -1.51
PTCD3-209	ENST00000472044	SSU72P8	A0A1W2PR75	194 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	TMEM82	A0PJX8	343 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	PLD2	O14939	933 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	FGF10	O15520	208 aa	Predicted RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	KCNQ2	O43526	872 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	RFPL3	O75679	317 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	SNRPB2	P08579	225 aa	Known RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	IFNGR1	P15260	489 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	EGR3	Q06889	387 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	SCRN1	Q12765	414 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	BNIP3	Q12983	259 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	FNDC3B	Q53EP0	1204 aa	Known RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	ACBD5	Q5T8D3	534 aa	Predicted RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	VSIG10L	Q86VR7	867 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	TMEM145	Q8NBT3	493 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	NPLOC4	Q8TAT6	608 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	MRPL4	Q9BYD3	311 aa	Known RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	TMX1	Q9H3N1	280 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	NCOA5	Q9HCD5	579 aa	Known RBP	5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	CCDC39	Q9UFE4	941 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	SBNO2	Q9Y2G9	1366 aa		5.62	□□□□□ -1.51
PTCD3-209	ENST00000472044	STXBP3	O00186	592 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	ADAM23	O75077	832 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	ASMTL	O95671	621 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	THBD	P07204	575 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	GSTM1	P09488	218 aa		5.61	□□□□□ -1.51

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