RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 AXIN2Q9Y2T1 843 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 EPN1Q9Y6I3 576 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 LTN1O94822 1766 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 N4BP1O75113 896 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 DIS3L2Q8IYB7 885 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CXorf56Q9H5V9 222 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ACTR5Q9H9F9 607 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 NLRP2Q9NX02 1062 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 TMOD2Q9NZR1 351 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF335Q9H4Z2 1342 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 PVALEFA0A1B0GWK0 134 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 FRMD3A2A2Y4 597 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 GOLGA8KD6RF30 607 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ACTN3Q08043 901 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 IKQ13123 557 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CNNM3Q8NE01 707 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CNKSR1Q969H4 720 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC47Q96A33 483 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 FAM129AQ9BZQ8 928 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 DNAJC8O75937 253 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC172P0C7W6 258 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ACBD3Q9H3P7 528 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 A0A0G2JLW4 131 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 DEXIO95424 95 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ATP6V1AP38606 617 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 SKIV2L2P42285 1042 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 MFSD5Q6N075 450 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 BTNL9Q6UXG8 535 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 RELL1Q8IUW5 271 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 SLC35F6Q8N357 371 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 RIOK1Q9BRS2 568 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 BOLA2Q9H3K6 86 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 KAT14Q9H8E8 782 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 FAM204AQ9H8W3 233 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 TTC26A0AVF1 554 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 NPEPPSP55786 919 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 HYIQ5T013 277 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ZFYVE27Q5T4F4 411 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 HAUS3Q68CZ6 603 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 GIGYF2Q6Y7W6 1299 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ANKRD18AQ8IVF6 992 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ANKRD20A12PQ8NF67 263 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ERCC4Q92889 916 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 BRIP1Q9BX63 1249 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC8Q9H0W5 538 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 VCPKMTQ9H867 229 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 SAMSN1Q9NSI8 373 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 TSKSQ9UJT2 592 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 SLC12A4Q9UP95 1085 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 RCCD1A6NED2 376 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 FOXN1O15353 648 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 TRAPPC3O43617 180 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 CA8P35219 290 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 PTGISQ16647 500 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 TTMPQ5BVD1 217 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 RGS9BPQ6ZS82 235 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ASRGL1Q7L266 308 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 PIGWQ7Z7B1 504 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 MYCBPAPQ8TBZ2 947 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ZFAND2BQ8WV99 257 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 MIEF2Q96C03 454 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 DHTKD1Q96HY7 919 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 EPC1Q9H2F5 836 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 ATP6V0A4Q9HBG4 840 aa5.99□□□□□ -1.45
SYNE1-220ENST00000471834 NCOA5Q9HCD5 579 aaKnown RBP5.99□□□□□ -1.45
SYNE1-220ENST00000471834 PPP1R12AO14974 1030 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 GFPT2O94808 682 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CCNE1P24864 410 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CLCN2P51788 898 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 GRIN1Q05586 938 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 TMEM132AQ24JP5 1023 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 XAGE3Q8WTP9 111 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CNNM2Q9H8M5 875 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SUGCTQ9HAC7 445 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 TRMT1Q9NXH9 659 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 STIM2Q9P246 746 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 RASA1P20936 1047 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CASP14P31944 242 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 PDE6BP35913 854 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 USP8P40818 1118 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 PDIA5Q14554 519 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ESCO1Q5FWF5 840 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CYP26C1Q6V0L0 522 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 AZIN2Q96A70 460 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 PAGE5Q96GU1 130 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CABS1Q96KC9 395 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC28BQ9BUN5 200 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 NDST4Q9H3R1 872 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SH3GLB2Q9NR46 395 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 KLF18A0A0U1RQI7 1052 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 DNM2P50570 870 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 CKAP4Q07065 602 aaKnown RBP5.98□□□□□ -1.45
SYNE1-220ENST00000471834 SBK1Q52WX2 424 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 TTLL7Q6ZT98 887 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 NUP58Q9BVL2 599 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ADAM7Q9H2U9 754 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 HDAC9Q9UKV0 1011 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 LAD1O00515 517 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 PMM2O15305 246 aa5.98□□□□□ -1.45
SYNE1-220ENST00000471834 ECE2O60344 883 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms