RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 HSPA5P11021 654 aaKnown RBP8.4□□□□□ -1.06
PTCD3-208ENST00000469585 LRRFIP1Q32MZ4 808 aaKnown RBP8.4□□□□□ -1.06
PTCD3-208ENST00000469585 OVOS1Q6IE37 1185 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.4□□□□□ -1.06
PTCD3-208ENST00000469585 SLFN12Q8IYM2 578 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 TMEM40Q8WWA1 233 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 COG3Q96JB2 828 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 SPOCK3Q9BQ16 436 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 COL22A1Q8NFW1 1626 aaPredicted RBP8.4□□□□□ -1.07
PTCD3-208ENST00000469585 EDC4Q6P2E9 1401 aaKnown RBP8.39□□□□□ -1.07
PTCD3-208ENST00000469585 LRIG2O94898 1065 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 CST3P01034 146 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-208ENST00000469585 SSBP05455 408 aaKnown RBP eCLIP8.39□□□□□ -1.07
PTCD3-208ENST00000469585 EIF6P56537 245 aaKnown RBP8.39□□□□□ -1.07
PTCD3-208ENST00000469585 NFKBIBQ15653 356 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 PRAMEF13Q5VWM6 474 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 CDCP2Q5VXM1 449 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 FBXW10Q5XX13 1052 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 ARMCX6Q7L4S7 300 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 LSRQ86X29 649 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-208ENST00000469585 FAM13CQ8NE31 585 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 CPLX3Q8WVH0 158 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 ATG4CQ96DT6 458 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 FOXQ1Q9C009 403 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 C7orf69Q9H7B7 122 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 LGR6Q9HBX8 967 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 KLHL3Q9UH77 587 aa8.39□□□□□ -1.07
PTCD3-208ENST00000469585 ANKRD36BQ8N2N9 1353 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 CGNL1Q0VF96 1302 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 TTC21BQ7Z4L5 1316 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 HMX2A2RU54 273 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 ATP2B1P20020 1258 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 RBM6P78332 1123 aaKnown RBP8.38□□□□□ -1.07
PTCD3-208ENST00000469585 DOC2BQ14184 412 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 PAOXQ6QHF9 649 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 UNC5CLQ8IV45 518 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 FAM169BQ8N8A8 192 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 GATA6Q92908 595 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 DRC1Q96MC2 740 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 TESK2Q96S53 571 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 DPH2Q9BQC3 489 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-208ENST00000469585 SLC12A5Q9H2X9 1139 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 CNNM2Q9H8M5 875 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 ZNF408Q9H9D4 720 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 STOML1Q9UBI4 398 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 MRVI1Q9Y6F6 885 aa8.38□□□□□ -1.07
PTCD3-208ENST00000469585 MSTNO14793 375 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 ETFBP38117 255 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 YARSP54577 528 aaKnown RBP8.37□□□□□ -1.07
PTCD3-208ENST00000469585 NKAPLQ5M9Q1 402 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 MFSD2AQ8NA29 543 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 OR6P1Q8NGX9 317 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 ARMC5Q96C12 935 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 CRBNQ96SW2 442 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 KNSTRNQ9Y448 316 aa8.37□□□□□ -1.07
PTCD3-208ENST00000469585 TNFRSF10CO14798 259 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 GCP02774 474 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 H2AFB1P0C5Y9 115 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 H2AFB2P0C5Z0 115 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 NME1P15531 152 aaKnown RBP8.36□□□□□ -1.07
PTCD3-208ENST00000469585 CDK5R2Q13319 367 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 RSPO4Q2I0M5 234 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-208ENST00000469585 ARSHQ5FYA8 562 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 GPAT2Q6NUI2 795 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 NLRC3Q7RTR2 1065 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 TAB3Q8N5C8 712 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-208ENST00000469585 ANAPC16Q96DE5 110 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 TM9SF2Q99805 663 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 BTG4Q9NY30 223 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 LRP6O75581 1613 aa8.36□□□□□ -1.07
PTCD3-208ENST00000469585 A0A1W2PP64 1363 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 TRPM3Q9HCF6 1732 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-208ENST00000469585 ALS2Q96Q42 1657 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 ACRP10323 421 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 AMPHP49418 695 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 INTS3Q68E01 1043 aaKnown RBP8.35□□□□□ -1.07
PTCD3-208ENST00000469585 RUFY4Q6ZNE9 571 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 DHX38Q92620 1227 aaKnown RBP8.35□□□□□ -1.07
PTCD3-208ENST00000469585 CPSF1Q10570 1443 aaKnown RBP8.35□□□□□ -1.07
PTCD3-208ENST00000469585 SMG6Q86US8 1419 aaKnown RBP8.35□□□□□ -1.07
PTCD3-208ENST00000469585 KIAA0232Q92628 1395 aa8.35□□□□□ -1.07
PTCD3-208ENST00000469585 MARF1Q9Y4F3 1742 aaKnown RBP8.34□□□□□ -1.07
PTCD3-208ENST00000469585 SLITRK5O94991 958 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 ADMP35318 185 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 RNF43Q68DV7 783 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 SHISA5Q8N114 240 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 XAGE3Q8WTP9 111 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 PPP1R13LQ8WUF5 828 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 CYB5D2Q8WUJ1 264 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 CCDC74BQ96LY2 380 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 PRDM10Q9NQV6 1147 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 AKAP12Q02952 1782 aa8.34□□□□□ -1.07
PTCD3-208ENST00000469585 COL14A1Q05707 1796 aaKnown RBP8.34□□□□□ -1.07
PTCD3-208ENST00000469585 USP19O94966 1318 aa8.33□□□□□ -1.08
PTCD3-208ENST00000469585 RGS13O14921 159 aa8.33□□□□□ -1.08
PTCD3-208ENST00000469585 STK10O94804 968 aaKnown RBP8.33□□□□□ -1.08
PTCD3-208ENST00000469585 IGHA1P01876 353 aa8.33□□□□□ -1.08
PTCD3-208ENST00000469585 RAG1P15918 1043 aa8.33□□□□□ -1.08
PTCD3-208ENST00000469585 GUCY2CP25092 1073 aa8.33□□□□□ -1.08
PTCD3-208ENST00000469585 GTF2F1P35269 517 aaKnown RBP eCLIP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms