RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PI4KBQ9UBF8 816 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 HERC5Q9UII4 1024 aaKnown RBP6.53□□□□□ -1.36
PTPN4-209ENST00000469511 PHF24Q9UPV7 400 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 TACC3Q9Y6A5 838 aa6.53□□□□□ -1.36
PTPN4-209ENST00000469511 A0A1B0GUL7 405 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 A0A1W2PQ45 241 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-209ENST00000469511 A0A1W2PQY0 241 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 MYADML2A6NDP7 307 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L15C9J2P7 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L13C9JLJ4 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L11C9JVI0 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L18D6R9N7 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L22D6RA61 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L17D6RBQ6 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L19D6RCP7 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L20D6RJB6 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 GPR37L1O60883 481 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 CIAO1O76071 339 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 CSF2RAP15509 400 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 JUNDP17535 347 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 VCAM1P19320 739 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 ERCC3P19447 782 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 GUCY1A2P33402 732 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 MCAMP43121 646 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 USP17L24Q0WX57 530 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 DPP9Q86TI2 863 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 WDR63Q8IWG1 891 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 ZGPATQ8N5A5 531 aaKnown RBP6.52□□□□□ -1.37
PTPN4-209ENST00000469511 SLC44A5Q8NCS7 719 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 C12orf42Q96LP6 360 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 RPAP3Q9H6T3 665 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-209ENST00000469511 RAI14Q9P0K7 980 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 CHD7Q9P2D1 2997 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 PTPRSQ13332 1948 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 TET1Q8NFU7 2136 aa6.52□□□□□ -1.37
PTPN4-209ENST00000469511 FLT1P17948 1338 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 UMODL1Q5DID0 1318 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 A0A1W2PRG0 241 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 EPOPA6NHQ4 379 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 TIMP1P01033 207 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 PGK2P07205 417 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 IL15P40933 162 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-209ENST00000469511 ABL2P42684 1182 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 PTPRNQ16849 979 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 OLFML2BQ68BL8 750 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 SPTY2D1Q68D10 685 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-209ENST00000469511 LBX2Q6XYB7 198 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 SPRED2Q7Z698 418 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 FOXP4Q8IVH2 680 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-209ENST00000469511 FAM160A2Q8N612 972 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-209ENST00000469511 SPATA5Q8NB90 893 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 SSH1Q8WYL5 1049 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 ANKS1AQ92625 1134 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 VWCEQ96DN2 955 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 NEUROD6Q96NK8 337 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 SPSB2Q99619 263 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 C1QTNF1Q9BXJ1 281 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 PPP1R12CQ9BZL4 782 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 CERS4Q9HA82 394 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 XPNPEP3Q9NQH7 507 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 TBX21Q9UL17 535 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 IVNS1ABPQ9Y6Y0 642 aa6.51□□□□□ -1.37
PTPN4-209ENST00000469511 PDS5AQ29RF7 1337 aaKnown RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 MYH8P13535 1937 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 ADCY6O43306 1168 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 TLL1O43897 1013 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 ADAMTS4O75173 837 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 GLRX3O76003 335 aaKnown RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 DXOO77932 396 aaKnown RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 ARHGEF15O94989 841 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 F12P00748 615 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 LDHCP07864 332 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 ZNF865P0CJ78 1059 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 PTGS1P23219 599 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 CYP2C18P33260 490 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 COPS2P61201 443 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 CCNA1P78396 465 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 RAB3GAP1Q15042 981 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 NR6A1Q15406 480 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 MFSD5Q6N075 450 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 ANKRD33Q7Z3H0 272 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 CLEC10AQ8IUN9 316 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 CRACR2BQ8N4Y2 399 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-209ENST00000469511 EPS8L1Q8TE68 723 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 MAML3Q96JK9 1138 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 FEZ1Q99689 392 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 MTRQ99707 1265 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 KIAA1683Q9H0B3 1180 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 COPRSQ9NQ92 184 aa6.5□□□□□ -1.37
PTPN4-209ENST00000469511 TRIP12Q14669 1992 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 BAZ2AQ9UIF9 1905 aaKnown RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 SMIM22K7EJ46 135 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 ADH1BP00325 375 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 CDK7P50613 346 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 PLCD1P51178 756 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 MMP16P51512 607 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 ACLYP53396 1101 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 PTPN5P54829 565 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 GSTO1P78417 241 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 PLS1Q14651 629 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms