RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 DSG2Q14126 1118 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 COG2Q14746 738 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 ASPRV1Q53RT3 343 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 FAM83BQ5T0W9 1011 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 GPATCH4Q5T3I0 446 aaKnown RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 PRRT2Q7Z6L0 340 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 HOMEZQ8IX15 550 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 PRPF38AQ8NAV1 312 aaKnown RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 CTCFLQ8NI51 663 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 CHURC1Q8WUH1 139 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 LPAR1Q92633 364 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 DDX11Q96FC9 970 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 WNK4Q96J92 1243 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 AIFM3Q96NN9 605 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 PIGSQ96S52 555 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 P2RX7Q99572 595 aaKnown RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 PTPN18Q99952 460 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SPZ1Q9BXG8 430 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SH2D4AQ9H788 454 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 GOPCQ9HD26 462 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 GJB4Q9NTQ9 266 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 FBXO28Q9NVF7 368 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 HOXC10Q9NYD6 342 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 ORC3Q9UBD5 711 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 FEM1BQ9UK73 627 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 PRR12Q9ULL5 1215 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SMC3Q9UQE7 1217 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 TLL2Q9Y6L7 1015 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SIPA1L1O43166 1804 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 FRMPD2Q68DX3 1309 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 CDK5RAP2Q96SN8 1893 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 MYH1P12882 1939 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 FOCADQ5VW36 1801 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 PNMA6FA0A0J9YX94 578 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 PTPDC1A2A3K4 754 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 TMEM88BA6NKF7 163 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L15C9J2P7 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L13C9JLJ4 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L11C9JVI0 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L18D6R9N7 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L22D6RA61 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L17D6RBQ6 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L19D6RCP7 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L20D6RJB6 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 CPLX1O14810 134 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 ADAMTS3O15072 1205 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 WDR46O15213 610 aaKnown RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 PPP1R11O60927 126 aaPredicted RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 VCAM1P19320 739 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 SYT1P21579 422 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 SNAP25P60880 206 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 USP17L24Q0WX57 530 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 PKP1Q13835 747 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 ZYXQ15942 572 aaKnown RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 LARP1BQ659C4 914 aaKnown RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 RGMBQ6NW40 437 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 CPLX2Q6PUV4 134 aaKnown RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 RGS22Q8NE09 1264 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 HHIPL1Q96JK4 782 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 ZIC5Q96T25 663 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 KCNK17Q96T54 332 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 SLC26A6Q9BXS9 759 aa6.9□□□□□ -1.3
USP39-213ENST00000467885 RNF26Q9BY78 433 aaPredicted RBP6.9□□□□□ -1.3
USP39-213ENST00000467885 ECM29Q5VYK3 1845 aa6.9□□□□□ -1.31
USP39-213ENST00000467885 RAD21O60216 631 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 DEXIO95424 95 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 TM4SF4P48230 202 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 ZNF157P51786 506 aaPredicted RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 HMGN5P82970 282 aaKnown RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 SNAPC2Q13487 334 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 NPY5RQ15761 445 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 PFKFB3Q16875 520 aaPredicted RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 TREML2Q5T2D2 321 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 SYDE2Q5VT97 1194 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 OTUD7BQ6GQQ9 843 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 TYW1BQ6NUM6 668 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 FASTKD5Q7L8L6 764 aaKnown RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 FAM160B2Q86V87 743 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 PROCA1Q8NCQ7 364 aaPredicted RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 FBXO18Q8NFZ0 1043 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 PIBF1Q8WXW3 757 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 BRI3BPQ8WY22 251 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 CCDC102AQ96A19 550 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 ALG1Q9BT22 464 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 RPAP3Q9H6T3 665 aaPredicted RBP6.89□□□□□ -1.31
USP39-213ENST00000467885 TMOD4Q9NZQ9 345 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 RBPJLQ9UBG7 517 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 ZNF536O15090 1300 aa6.89□□□□□ -1.31
USP39-213ENST00000467885 CNTNAP5Q8WYK1 1306 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 STK36Q9NRP7 1315 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 BTBD19C9JJ37 291 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 VWA5AO00534 786 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 ZBTB5O15062 677 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 CDKL5O76039 1030 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 HSP90AA1P07900 732 aaKnown RBP6.88□□□□□ -1.31
USP39-213ENST00000467885 ZBTB48P10074 688 aaPredicted RBP6.88□□□□□ -1.31
USP39-213ENST00000467885 CETPP11597 493 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 SCG2P13521 617 aa6.88□□□□□ -1.31
USP39-213ENST00000467885 PDIA4P13667 645 aaKnown RBP6.88□□□□□ -1.31
USP39-213ENST00000467885 APLP1P51693 650 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms