RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 NOTCH3Q9UM47 2321 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 ACTN1P12814 892 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 RARS2Q5T160 578 aaKnown RBP5.7□□□□□ -1.5
CSMD3-204ENST00000455883 SYTL4Q96C24 671 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-204ENST00000455883 SIKE1Q9BRV8 207 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 ENOPH1Q9UHY7 261 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 KCNH3Q9ULD8 1083 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 AFDNP55196 1824 aaKnown RBP5.7□□□□□ -1.5
CSMD3-204ENST00000455883 UNC13CQ8NB66 2214 aa5.7□□□□□ -1.5
CSMD3-204ENST00000455883 ENO4A6NNW6 628 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 MIF4GDA9UHW6 222 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 GCFC2P16383 781 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 KRT25Q7Z3Z0 450 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 DACT1Q9NYF0 836 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 IQCA1LA6NCM1 817 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TMEM87AQ8NBN3 555 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 GEMIN8Q9NWZ8 242 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF212Q9UDV6 495 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ZPR1O75312 459 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SNUPNO95149 360 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SATB1Q01826 763 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 FBXW7Q969H0 707 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SPTAN1Q13813 2472 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 RASSF10A6NK89 507 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ATP6V0A4Q9HBG4 840 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 IL1RAPL1Q9NZN1 696 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 IDH1O75874 414 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ATP2B1P20020 1258 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TRADDQ15628 312 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 RASIP1Q5U651 963 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 FRA10AC1Q70Z53 315 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 CKAP2LQ8IYA6 745 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PROM2Q8N271 834 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ARMC2Q8NEN0 867 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TRIM63Q969Q1 353 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 RPS6KC1Q96S38 1066 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 POLR3EQ9NVU0 708 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 BRWD1Q9NSI6 2320 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PRDM15P57071 1507 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 NCAPD2Q15021 1401 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SNRPA1P09661 255 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 KPNB1Q14974 876 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 KLC3Q6P597 504 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ALG1Q9BT22 464 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TRIM45Q9H8W5 580 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 MAP3K7O43318 606 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 KRT15P19012 456 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 CDH2P19022 906 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TMTC3Q6ZXV5 915 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 RSPH1Q8WYR4 309 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 CDK19Q9BWU1 502 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PFASO15067 1338 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 CASP14P31944 242 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PPP2R5CQ13362 524 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SPOPO43791 374 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 YY1P25490 414 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PHEXP78562 749 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 BEND3Q5T5X7 828 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TNIP2Q8NFZ5 429 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 CHMP2BQ9UQN3 213 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 INTS1Q8N201 2190 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 GRID2IPA4D2P6 1211 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 GRM8O00222 908 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 MRPS35P82673 323 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PURAQ00577 322 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 OCA2Q04671 838 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 FSCBQ5H9T9 825 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 AKNAD1Q5T1N1 836 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF804AQ7Z570 1209 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 SETD3Q86TU7 594 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 TTC17Q96AE7 1141 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 PSD3Q9NYI0 1048 aa5.69□□□□□ -1.5
CSMD3-204ENST00000455883 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.69□□□□□ -1.5
CSMD3-204ENST00000455883 WNK2Q9Y3S1 2297 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SFMBT2Q5VUG0 894 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 C19orf60Q96EN9 201 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 OTUB1Q96FW1 271 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CYTH2Q99418 400 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 INO80Q9ULG1 1556 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 FAM13AO94988 1023 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 RAB15P59190 212 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 TSC22D3Q99576 134 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DMRT2Q9Y5R5 561 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SNRNP200O75643 2136 aaKnown RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ATP7AQ04656 1500 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 FAM83GA6ND36 823 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ELL2O00472 640 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 POLR3DP05423 398 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 STAT1P42224 750 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PSMD2Q13200 908 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 KLHDC4Q8TBB5 520 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 TMEM60Q9H2L4 133 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 GPATCH8Q9UKJ3 1502 aaKnown RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF407Q9C0G0 2248 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 NNTQ13423 1086 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 MAPRE2Q15555 327 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 AASDHQ4L235 1098 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CDC23Q9UJX2 597 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 WDR46O15213 610 aaKnown RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms