RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 TLR2O60603 784 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 CDKL5O76039 1030 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 MAP2K1Q02750 393 aaPredicted RBP13.43□□□□□ -0.26
SCN9A-204ENST00000452182 POTEEQ6S8J3 1075 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 NECAB1Q8N987 351 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 REPS2Q8NFH8 660 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 ATG4CQ96DT6 458 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 LLPHQ9BRT6 129 aaKnown RBP13.43□□□□□ -0.26
SCN9A-204ENST00000452182 CPVLQ9H3G5 476 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 ZFYVE28Q9HCC9 887 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 SAGE1Q9NXZ1 904 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 RBM27Q9P2N5 1060 aaKnown RBP13.43□□□□□ -0.26
SCN9A-204ENST00000452182 PNMA2Q9UL42 364 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 RABGAP1Q9Y3P9 1069 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 CNTNAP5Q8WYK1 1306 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 MYH6P13533 1939 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 K7ELQ4 463 aaPredicted RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 ZBTB5O15062 677 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 ZBED4O75132 1171 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 ST3GAL1Q11201 340 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 CMTR1Q8N1G2 835 aaKnown RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 RNF26Q9BY78 433 aaPredicted RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 RNF186Q9NXI6 227 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 RBPJLQ9UBG7 517 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 MORF4L1Q9UBU8 362 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 PRPF3O43395 683 aaKnown RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 CRHR2Q13324 411 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 CUL4AQ13619 759 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 CDC37Q16543 378 aaPredicted RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 HSCBQ8IWL3 235 aa13.42□□□□□ -0.26
SCN9A-204ENST00000452182 RRP36Q96EU6 259 aaKnown RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 ZNF214Q9UL59 606 aaPredicted RBP13.42□□□□□ -0.26
SCN9A-204ENST00000452182 PNMA6FA0A0J9YX94 578 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 CNMDO75829 334 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 FMNL1O95466 1100 aaPredicted RBP13.41□□□□□ -0.26
SCN9A-204ENST00000452182 CTDNEP1O95476 244 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 ICAM1P05362 532 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 BCRP11274 1271 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 TRAF1Q13077 416 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 TMEM132BQ14DG7 1078 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 FAM110CQ1W6H9 321 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 C17orf99Q6UX52 265 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 CCDC83Q8IWF9 413 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 TRIM22Q8IYM9 498 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 CCDC82Q8N4S0 544 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 JMYQ8N9B5 988 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 PIGSQ96S52 555 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 VAT1LQ9HCJ6 419 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 ZNF536O15090 1300 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 STK36Q9NRP7 1315 aa13.41□□□□□ -0.26
SCN9A-204ENST00000452182 BAZ2BQ9UIF8 2168 aaKnown RBP13.41□□□□□ -0.26
SCN9A-204ENST00000452182 QRICH1Q2TAL8 776 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 NOM1Q5C9Z4 860 aaKnown RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 NSUN7Q8NE18 718 aaKnown RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 GPRC5AQ8NFJ5 357 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 SMARCC2Q8TAQ2 1214 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 RNF25Q96BH1 459 aaPredicted RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 TEX13BQ9BXU2 312 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 TXNRD2Q9NNW7 524 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 BTBD7Q9P203 1132 aa13.4□□□□□ -0.26
SCN9A-204ENST00000452182 SEC63Q9UGP8 760 aaKnown RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 CTDP1Q9Y5B0 961 aaPredicted RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 V9GY48 417 aaPredicted RBP13.4□□□□□ -0.26
SCN9A-204ENST00000452182 hCG_1984214I3L0E3 225 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 TRPA1O75762 1119 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 COPB2P35606 906 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 STAT3P40763 770 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 ERVK-9P63128 1117 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 ERVK-24P63145 666 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 AKAP17AQ02040 695 aaKnown RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 SSRP1Q08945 709 aaKnown RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 HOMER1Q86YM7 354 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 RIOX2Q8IUF8 465 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 ANKRD13CQ8N6S4 541 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 ZNF713Q8N859 430 aaPredicted RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 PHKBQ93100 1093 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 INTS4Q96HW7 963 aaKnown RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 BEGAINQ9BUH8 593 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 AMNQ9BXJ7 453 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 SLC26A6Q9BXS9 759 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 SPATC1LQ9H0A9 340 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 TSHZ2Q9NRE2 1034 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 WBP1LQ9NX94 342 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 PTPDC1A2A3K4 754 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 DEXIO95424 95 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 SLC25A27O95847 323 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 CCNA1P78396 465 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 HMGN5P82970 282 aaKnown RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 PKN1Q16512 942 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 PFKFB3Q16875 520 aaPredicted RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 Q3C1V9 767 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 TKFCQ3LXA3 575 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 CCDC174Q6PII3 467 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 FBXO11Q86XK2 927 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 HS6ST3Q8IZP7 471 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 SHCBP1Q8NEM2 672 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 PAGR1Q9BTK6 254 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 RAVER2Q9HCJ3 691 aaKnown RBP13.39□□□□□ -0.27
SCN9A-204ENST00000452182 CPA4Q9UI42 421 aa13.39□□□□□ -0.27
SCN9A-204ENST00000452182 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms