RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ICA1LQ8NDH6 482 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 NDE1Q9NXR1 346 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 ADAMTS8Q9UP79 889 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 RPN1P04843 607 aaKnown RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 ACTN1P12814 892 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 STAT2P52630 851 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 IFT88Q13099 833 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 FAM133BQ5BKY9 247 aaKnown RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 AKNAD1Q5T1N1 836 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 LRRC8EQ6NSJ5 796 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 BZW1Q7L1Q6 419 aaKnown RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 DCLK2Q8N568 766 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 BRD8Q9H0E9 1235 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 SOX13Q9UN79 622 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 IRX1P78414 480 aaPredicted RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 TSTA3Q13630 321 aaPredicted RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 CNPY4Q8N129 248 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 BTN2A2Q8WVV5 523 aa9.73□□□□□ -0.85
NIPBL-202ENST00000448238 UTP6Q9NYH9 597 aaKnown RBP9.73□□□□□ -0.85
NIPBL-202ENST00000448238 RRM2BQ7LG56 351 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GOLGA8TH3BQL2 631 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GOLGA8HP0CJ92 632 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 DNM2P50570 870 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.72□□□□□ -0.85
NIPBL-202ENST00000448238 BLOC1S6Q9UL45 172 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 DYTNA2CJ06 578 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 ALDH1L1O75891 902 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 IGBP1P78318 339 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GOLGA8FQ08AF8 430 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GOLGA8DPQ0D2H9 430 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 AFAP1Q8N556 730 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 PIGUQ9H490 435 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GMEB1Q9Y692 573 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 KRIT1O00522 736 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 RNASE9P60153 205 aaKnown RBP9.72□□□□□ -0.85
NIPBL-202ENST00000448238 LONRF2Q1L5Z9 754 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 FAM180AQ6UWF9 173 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 KRT73Q86Y46 540 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 DDX54Q8TDD1 881 aaKnown RBP9.72□□□□□ -0.85
NIPBL-202ENST00000448238 ASAP2O43150 1006 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 SYNCRIPO60506 623 aaKnown RBP9.72□□□□□ -0.85
NIPBL-202ENST00000448238 AP1B1Q10567 949 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 ALDH1L2Q3SY69 923 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.72□□□□□ -0.85
NIPBL-202ENST00000448238 CCDC51Q96ER9 411 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 EDEM3Q9BZQ6 932 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 IMPDH2P12268 514 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 AP2B1P63010 937 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 KLHL7Q8IXQ5 586 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 RAD21L1Q9H4I0 556 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 ECHDC1Q9NTX5 307 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 ABCF3Q9NUQ8 709 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 L3MBTL1Q9Y468 752 aa9.72□□□□□ -0.85
NIPBL-202ENST00000448238 GOLGA8MH3BSY2 632 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 PRPF6O94906 941 aaKnown RBP9.71□□□□□ -0.85
NIPBL-202ENST00000448238 TSPY1Q01534 308 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 TP53BP2Q13625 1128 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 NFE2L2Q16236 605 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 TRIM69Q86WT6 500 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 MYLK2Q9H1R3 596 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 SMARCAD1Q9H4L7 1026 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 USTQ9Y2C2 406 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 ATF2P15336 505 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 AARSP49588 968 aaKnown RBP eCLIP9.71□□□□□ -0.851e-6■□□□□ 8.7
NIPBL-202ENST00000448238 SFMBT2Q5VUG0 894 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 OLFM1Q99784 485 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 ITGB1BP2Q9UKP3 347 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 ESRRAP11474 423 aaPredicted RBP9.71□□□□□ -0.85
NIPBL-202ENST00000448238 KRT76Q01546 638 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 MORF4L2Q15014 288 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 ELF2Q15723 593 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 DHX38Q92620 1227 aaKnown RBP9.71□□□□□ -0.85
NIPBL-202ENST00000448238 FHDC1Q9C0D6 1143 aaPredicted RBP9.71□□□□□ -0.85
NIPBL-202ENST00000448238 TUFT1Q9NNX1 390 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 NSMCE4AQ9NXX6 385 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 SYNRGQ9UMZ2 1314 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 KLF18A0A0U1RQI7 1052 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 NBPF26B4DH59 902 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 XPOTO43592 962 aaKnown RBP9.71□□□□□ -0.85
NIPBL-202ENST00000448238 SLFN14P0C7P3 912 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 CASP14P31944 242 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 NBPF14Q5TI25 921 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 USP48Q86UV5 1035 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 DENND6AQ8IWF6 608 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 NBPF15Q8N660 670 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 ASZ1Q8WWH4 475 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 FANCEQ9HB96 536 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 SMYD2Q9NRG4 433 aa9.71□□□□□ -0.85
NIPBL-202ENST00000448238 PRDM2Q13029 1718 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 IQCA1LA6NCM1 817 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 GNAT3A8MTJ3 354 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 C6orf229H3BNL8 230 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 CDH2P19022 906 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-202ENST00000448238 MYLK4Q86YV6 388 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-202ENST00000448238 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-202ENST00000448238 CARD6Q9BX69 1037 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 SELENONQ9NZV5 590 aa9.71□□□□□ -0.86
NIPBL-202ENST00000448238 NUTM2BA6NNL0 878 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-202ENST00000448238 NUTM2EB1AL46 878 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-202ENST00000448238 TK2O00142 265 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms