RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 SNX14Q9Y5W7 946 aa9.42□□□□□ -0.9
PTPN3-204ENST00000446349 GEN1Q17RS7 908 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 FAM102BQ5T8I3 360 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GBP6Q6ZN66 633 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 CNPY4Q8N129 248 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 CCDC89Q8N998 374 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 COA7Q96BR5 231 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 DNAI1Q9UI46 699 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 USH1CQ9Y6N9 552 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 MAN1A1P33908 653 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 KRT40Q6A162 431 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 RUFY4Q6ZNE9 571 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 TRIM50Q86XT4 487 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GOLGA8QA0A0J9YX86 632 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GOLGA8OA6NCC3 632 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GOLGA8NF8WBI6 632 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 ZNF202O95125 648 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 LMNB2Q03252 620 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PRPSAP1Q14558 356 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GTF3C6Q969F1 213 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PAIP2Q9BPZ3 127 aaKnown RBP9.41□□□□□ -0.9
PTPN3-204ENST00000446349 HOXC10Q9NYD6 342 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 IFNKQ9P0W0 207 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PHBP35232 272 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PSMC4P43686 418 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 BBOF1Q8ND07 529 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 GUCA1BQ9UMX6 200 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.41□□□□□ -0.9
PTPN3-204ENST00000446349 DDX39AO00148 427 aaKnown RBP9.41□□□□□ -0.9
PTPN3-204ENST00000446349 BMP3P12645 472 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PRKG1Q13976 671 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 TCP11Q8WWU5 503 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 CALR3Q96L12 384 aaKnown RBP9.41□□□□□ -0.9
PTPN3-204ENST00000446349 ABCA9Q8IUA7 1624 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 CTDSPL2Q05D32 466 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 MAP7D3Q8IWC1 876 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 SAMD15Q9P1V8 674 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 PCDHA1Q9Y5I3 950 aa9.41□□□□□ -0.9
PTPN3-204ENST00000446349 ORC2Q13416 577 aaPredicted RBP9.4□□□□□ -0.9
PTPN3-204ENST00000446349 CCDC6Q16204 474 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 BEND3Q5T5X7 828 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 RINT1Q6NUQ1 792 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 PODNQ7Z5L7 613 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 GPBP1Q86WP2 473 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 TYW1Q9NV66 732 aaKnown RBP9.4□□□□□ -0.9
PTPN3-204ENST00000446349 STK17AQ9UEE5 414 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 RXRAP19793 462 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 RASA3Q14644 834 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 NOSTRINQ8IVI9 506 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 IL17REQ8NFR9 667 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 NAPGQ99747 312 aaPredicted RBP9.4□□□□□ -0.9
PTPN3-204ENST00000446349 MED7O43513 233 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 SRGAP2BP0DMP2 458 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 FOXP1Q9H334 677 aaPredicted RBP9.4□□□□□ -0.9
PTPN3-204ENST00000446349 CLSTN2Q9H4D0 955 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 LMNB1P20700 586 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 ADALQ6DHV7 355 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 ARMCX3Q9UH62 379 aaPredicted RBP9.4□□□□□ -0.9
PTPN3-204ENST00000446349 UNC13BO14795 1591 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 PDE6CP51160 858 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 KLHL30Q0D2K2 578 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 TMEM179Q6ZVK1 233 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 EFCAB13Q8IY85 973 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 PLA2R1Q13018 1463 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 QRICH2Q9H0J4 1663 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 ABCC12Q96J65 1359 aa9.4□□□□□ -0.9
PTPN3-204ENST00000446349 CIITAP33076 1130 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 DOK7Q18PE1 504 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 KRT24Q2M2I5 525 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 ARHGAP24Q8N264 748 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 ZNF341Q9BYN7 854 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 STAM2O75886 525 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 DCAF4Q8WV16 495 aa9.4□□□□□ -0.91
PTPN3-204ENST00000446349 MTIF3Q9H2K0 278 aaKnown RBP9.4□□□□□ -0.91
PTPN3-204ENST00000446349 STX17P56962 302 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 KRT81Q14533 505 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 ERFEQ4G0M1 354 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 CFAP221Q4G0U5 840 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 PRR16Q569H4 304 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 LRCH2Q5VUJ6 765 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.39□□□□□ -0.91
PTPN3-204ENST00000446349 CTTNBP2NLQ9P2B4 639 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 WWC3Q9ULE0 1092 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 PRDM15P57071 1507 aaPredicted RBP9.39□□□□□ -0.91
PTPN3-204ENST00000446349 TMEM232C9JQI7 657 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 RNF8O76064 485 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 USP17L8P0C7I0 530 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NARFQ9UHQ1 456 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 SETBP1Q9Y6X0 1596 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NOL3O60936 208 aaKnown RBP9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NLRP10Q86W26 655 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NELFBQ8WX92 580 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 TNKSO95271 1327 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 K7ENM7 598 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 GYG1P46976 350 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 KCNV1Q6PIU1 500 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NDUFAF2Q8N183 169 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 PANK4Q9NVE7 773 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 NUB1Q9Y5A7 615 aa9.39□□□□□ -0.91
PTPN3-204ENST00000446349 METP08581 1390 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms