RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 AMPD2Q01433 879 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 AKAP17AQ02040 695 aaKnown RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 CNGA4Q8IV77 575 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 CCDC51Q96ER9 411 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 MXD3Q9BW11 206 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 HPCAL4Q9UM19 191 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 MYH7P12883 1935 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 MYH8P13535 1937 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 MYH2Q9UKX2 1941 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 E2F4Q16254 413 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 SKIDA1Q1XH10 827 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 DACT2Q5SW24 774 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 SPATA1Q5VX52 437 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 JDP2Q8WYK2 163 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 ANGEL1Q9UNK9 670 aaKnown RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 EGFRP00533 1210 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 PTPREP23469 700 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 IL15P40933 162 aaPredicted RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 GYG1P46976 350 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 USP14P54578 494 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 METTL24Q5JXM2 366 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 SWT1Q5T5J6 900 aaKnown RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 TMTC1Q8IUR5 882 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 CERS5Q8N5B7 392 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 ZC3H12CQ9C0D7 883 aaKnown RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 CD209Q9NNX6 404 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 FBXO2Q9UK22 296 aaPredicted RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 ZBTB12Q9Y330 459 aaPredicted RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 GYPCP04921 128 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 ADORA1P30542 326 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 FXR1P51114 621 aaKnown RBP eCLIP9.63□□□□□ -0.87
HPS4-206ENST00000439453 MAP9Q49MG5 647 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 FILIP1LQ4L180 1135 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 KANK3Q6NY19 840 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 COA1Q9GZY4 146 aa9.63□□□□□ -0.87
HPS4-206ENST00000439453 TMX4Q9H1E5 349 aaPredicted RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 GPBP1L1Q9HC44 474 aaPredicted RBP9.63□□□□□ -0.87
HPS4-206ENST00000439453 ACTN4O43707 911 aaKnown RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 MCM3P25205 808 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 STX17P56962 302 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 ERVK-24P63145 666 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 PUM3Q15397 648 aaKnown RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 KLHL10Q6JEL2 608 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 GPATCH11Q8N954 259 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CTAGE1Q96RT6 745 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 ZFYP08048 801 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 GMPSP49915 693 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 TOB1P50616 345 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 STIM1Q13586 685 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CIAPIN1Q6FI81 312 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 APOA5Q6Q788 366 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 NOSTRINQ8IVI9 506 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 SPATA20Q8TB22 786 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.62□□□□□ -0.87
HPS4-206ENST00000439453 RIN2Q8WYP3 895 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 TAF1DQ9H5J8 278 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 RNF216Q9NWF9 866 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 GPRC5DQ9NZD1 345 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 DENND2AQ9ULE3 1009 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 SYNRGQ9UMZ2 1314 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 SH2B2O14492 632 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 RANBP6O60518 1105 aaKnown RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 SHOX2O60902 331 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 ERLIN2O94905 339 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CHRM1P11229 460 aaPredicted RBP9.62□□□□□ -0.87
HPS4-206ENST00000439453 EPS15P42566 896 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CDKAL1Q5VV42 579 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CYB5R4Q7L1T6 521 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 PODNQ7Z5L7 613 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CCDC91Q7Z6B0 441 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 MICU3Q86XE3 530 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 CEP89Q96ST8 783 aa9.62□□□□□ -0.87
HPS4-206ENST00000439453 LAMB1P07942 1786 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 CD44P16070 742 aaKnown RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 HIRAP54198 1017 aaPredicted RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 EIF6P56537 245 aaKnown RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 NTRK3Q16288 839 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 GRIK5Q16478 980 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 CT47A1Q5JQC4 288 aaPredicted RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 NKX2-3Q8TAU0 364 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 COG1Q8WTW3 980 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 PUS7LQ9H0K6 701 aaKnown RBP9.61□□□□□ -0.87
HPS4-206ENST00000439453 ITIH6Q6UXX5 1313 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 UBE2Q2LH0YL09 131 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 GGCXP38435 758 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 CUL4BQ13620 913 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 CYP26C1Q6V0L0 522 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 FAM205AQ6ZU69 1335 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 TRAPPC11Q7Z392 1133 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 APPBP2Q92624 585 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 SLF1Q9BQI6 1058 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 NBPF3Q9H094 633 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 SENP2Q9HC62 589 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 BTBD18B2RXH4 712 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 SEMA3EO15041 775 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 ZBTB43O43298 467 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 CCT5P48643 541 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 LIG3P49916 1009 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 BCAMP50895 628 aa9.61□□□□□ -0.87
HPS4-206ENST00000439453 RSBN1LQ6PCB5 846 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms