RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 FAM196BA6NMK8 535 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 GNAT1P11488 350 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 CDK8P49336 464 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 HUNKP57058 714 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 ITKQ08881 620 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 FAM83BQ5T0W9 1011 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SCYL2Q6P3W7 929 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 USP17L2Q6R6M4 530 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 CCDC25Q86WR0 208 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 POMGNT1Q8WZA1 660 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 USP17L10C9JJH3 530 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 C7orf31Q8N865 590 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CEP170P1Q96L14 293 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 ANTXR1Q9H6X2 564 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 RAVER2Q9HCJ3 691 aaKnown RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 RABGAP1Q9Y3P9 1069 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 JAK2O60674 1132 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 TNNC1P63316 161 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 ODR4Q5SWX8 454 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 GALNT17Q6IS24 598 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 FASTKD5Q7L8L6 764 aaKnown RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 ZFYVE28Q9HCC9 887 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 LARSQ9P2J5 1176 aaKnown RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 CYP2D7A0A087X1C5 515 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 UQCRHLA0A096LP55 91 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 ERCC5P28715 1186 aaPredicted RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 FAM160A1Q05DH4 1040 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CDC37Q16543 378 aaPredicted RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 GEN1Q17RS7 908 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 SNRNP48Q6IEG0 339 aaKnown RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 C4orf50Q6ZRC1 276 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CAPZA3Q96KX2 299 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 PANK4Q9NVE7 773 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CGNQ9P2M7 1197 aaKnown RBP13.38□□□□□ -0.27
NEK1-201ENST00000439128 XRCC6P12956 609 aaKnown RBP eCLIP13.38□□□□□ -0.27
NEK1-201ENST00000439128 TYRO3Q06418 890 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CEP112Q8N8E3 955 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 CCT6BQ92526 530 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 FBXO40Q9UH90 709 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 SYNRGQ9UMZ2 1314 aa13.38□□□□□ -0.27
NEK1-201ENST00000439128 RIOK3O14730 519 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 RASGRF1Q13972 1273 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 CCDC127Q96BQ5 260 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 CTTNBP2NLQ9P2B4 639 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 ZMYM6O95789 1325 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 CCDC175P0C221 793 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 XPAP23025 273 aaPredicted RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 ADD1P35611 737 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 ADD2P35612 726 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 INTS4Q96HW7 963 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 IFNKQ9P0W0 207 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 BRPF3Q9ULD4 1205 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 PSAPP07602 524 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 PDXDC2PQ6P474 469 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 RSRC2Q7L4I2 434 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 CSRNP2Q9H175 543 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 CLSTN2Q9H4D0 955 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 MYO1AQ9UBC5 1043 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 HNRNPDLO14979 420 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 HOXA13P31271 388 aaPredicted RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 NKX1-1Q15270 411 aaPredicted RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 UAP1Q16222 522 aaPredicted RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 SNX25Q9H3E2 840 aa13.37□□□□□ -0.27
NEK1-201ENST00000439128 PPANQ9NQ55 473 aaKnown RBP13.37□□□□□ -0.27
NEK1-201ENST00000439128 SHTN1A0MZ66 631 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PPP2R5CQ13362 524 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 UVSSAQ2YD98 709 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 CTR9Q6PD62 1173 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 RYBPQ8N488 228 aaPredicted RBP13.36□□□□□ -0.27
NEK1-201ENST00000439128 GABPB2Q8TAK5 448 aaPredicted RBP13.36□□□□□ -0.27
NEK1-201ENST00000439128 C1orf112Q9NSG2 853 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 C1orf167Q5SNV9 1468 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 ABCC4O15439 1325 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 DENND3A2RUS2 1198 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PIK3CAP42336 1068 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 ANKRD36BP1Q96IX9 119 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 INPP5FQ9Y2H2 1132 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 ARHGAP31Q2M1Z3 1444 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 FCER1AP12319 257 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PTPREP23469 700 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 MYL5Q02045 173 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 SERPINA10Q9UK55 444 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PTPRMP28827 1452 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PTH1RQ03431 593 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 MTERF4Q7Z6M4 381 aaKnown RBP13.36□□□□□ -0.27
NEK1-201ENST00000439128 TRIM50Q86XT4 487 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 NELFBQ8WX92 580 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 PLEKHF1Q96S99 279 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 DISC1Q9NRI5 854 aa13.36□□□□□ -0.27
NEK1-201ENST00000439128 KBTBD13C9JR72 458 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 HSF2BPO75031 334 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 OSTNP61366 133 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 FAM173BQ6P4H8 233 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 C1orf228Q6PIY5 440 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 GANCQ8TET4 914 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 KMT5AQ9NQR1 393 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 COL4A3BPQ9Y5P4 624 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 RNF123Q5XPI4 1314 aa13.35□□□□□ -0.27
NEK1-201ENST00000439128 KLHL40Q2TBA0 621 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms