RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 EIF4A1P60842 406 aaKnown RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 POLR2FP61218 127 aaKnown RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 P3H4Q92791 437 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 RTEL1Q9NZ71 1219 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 SEPT9Q9UHD8 586 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 KCNQ3O43525 872 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 PFKFB1P16118 471 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 ME3Q16798 604 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 RYBPQ8N488 228 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 NUCKS1Q9H1E3 243 aaKnown RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 PARP2Q9UGN5 583 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 TBX22Q9Y458 520 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 ATP10BO94823 1461 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 COBLO75128 1261 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 TTLL7Q6ZT98 887 aa16.9■□□□□ 0.3
PTPRF-206ENST00000429895 XPO4Q9C0E2 1151 aaKnown RBP16.9■□□□□ 0.3
PTPRF-206ENST00000429895 UHRF1BP1Q6BDS2 1440 aa16.89■□□□□ 0.3
PTPRF-206ENST00000429895 CROCCP2Q86T23 111 aa16.89■□□□□ 0.3
PTPRF-206ENST00000429895 EFCC1Q9HA90 598 aa16.89■□□□□ 0.3
PTPRF-206ENST00000429895 AKT3Q9Y243 479 aa16.89■□□□□ 0.3
PTPRF-206ENST00000429895 ZNF277Q9NRM2 450 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-206ENST00000429895 CHL1O00533 1208 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 TMOD1P28289 359 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 CTNNA1P35221 906 aaKnown RBP16.89■□□□□ 0.29
PTPRF-206ENST00000429895 SLFN13Q68D06 897 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 CCDC68Q9H2F9 335 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 SLAIN2Q9P270 581 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 CLGNO14967 610 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 SLC4A1P02730 911 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 PHBP35232 272 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 DESI2Q9BSY9 194 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 MAGED2Q9UNF1 606 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-206ENST00000429895 TLR3O15455 904 aaKnown RBP16.89■□□□□ 0.29
PTPRF-206ENST00000429895 CHRNDQ07001 517 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 ZNF827Q17R98 1081 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 TTBK2Q6IQ55 1244 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 NEK8Q86SG6 692 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 LRRC43Q8N309 656 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 PARD3BQ8TEW8 1205 aa16.89■□□□□ 0.29
PTPRF-206ENST00000429895 ITSN2Q9NZM3 1697 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 OR52Z1P0C646 297 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 ATP5JP18859 108 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 ABCB5Q2M3G0 1257 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 TSNAXIP1Q2TAA8 658 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 FAM160B1Q5W0V3 765 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 ABI1Q8IZP0 508 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 NRBP2Q9NSY0 501 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 MAD1L1Q9Y6D9 718 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 TNKSO95271 1327 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 RASSF4Q9H2L5 321 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 SMYD2Q9NRG4 433 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 ARMCX3Q9UH62 379 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-206ENST00000429895 TROVE2P10155 538 aaKnown RBP eCLIP16.88■□□□□ 0.29
PTPRF-206ENST00000429895 USPL1Q5W0Q7 1092 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 ARPP19P56211 112 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 MKRN3Q13064 507 aaKnown RBP16.88■□□□□ 0.29
PTPRF-206ENST00000429895 PDE1CQ14123 709 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-206ENST00000429895 LRRC24Q50LG9 513 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 PDZD4Q76G19 769 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-206ENST00000429895 NOSTRINQ8IVI9 506 aa16.88■□□□□ 0.29
PTPRF-206ENST00000429895 EDC4Q6P2E9 1401 aaKnown RBP16.87■□□□□ 0.29
PTPRF-206ENST00000429895 CASP2P42575 452 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 HDAC11Q96DB2 347 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 NUB1Q9Y5A7 615 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 PIK3C2GO75747 1445 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 JADE1Q6IE81 842 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 GRK7Q8WTQ7 553 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 DACT3Q96B18 629 aaPredicted RBP16.87■□□□□ 0.29
PTPRF-206ENST00000429895 HAUS1Q96CS2 278 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 HINFPQ9BQA5 517 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 TRIM35Q9UPQ4 493 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 A0A0D9SFI3 127 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 H7C0C1 242 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 ATP5OP48047 213 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 TMTC4Q5T4D3 741 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 MYSM1Q5VVJ2 828 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 FANCBQ8NB91 859 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 CLIC6Q96NY7 704 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 SAR1BQ9Y6B6 198 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 ERVV-2B6SEH9 535 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 ADD1P35611 737 aaKnown RBP16.87■□□□□ 0.29
PTPRF-206ENST00000429895 ECE1P42892 770 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 ARHGEF10O15013 1369 aa16.87■□□□□ 0.29
PTPRF-206ENST00000429895 A6NJR5 290 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PDE6AP16499 860 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 XPAP23025 273 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 OAS2P29728 719 aaKnown RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 CLNS1AP54105 237 aaKnown RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 ADAM9Q13443 819 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 GJA10Q969M2 543 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PPP1R16BQ96T49 567 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 KCTD2Q14681 263 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 SCG2P13521 617 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PTH1RQ03431 593 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 BFSP1Q12934 665 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 TESK2Q96S53 571 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 TACO1Q9BSH4 297 aaKnown RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 LRFN2Q9ULH4 789 aa16.86■□□□□ 0.29
PTPRF-206ENST00000429895 PPEF1O14829 653 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-206ENST00000429895 IL1RL1Q01638 556 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms