RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 MAP2K7O14733 419 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 CCT5P48643 541 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 HERVK_113P62684 666 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 ATP2C1P98194 919 aaPredicted RBP13.96□□□□□ -0.17
CDH3-202ENST00000429102 APBA1Q02410 837 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 IRF2BP1Q8IU81 584 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 PNMA1Q8ND90 353 aa13.96□□□□□ -0.17
CDH3-202ENST00000429102 KCNQ2O43526 872 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 KIF5AQ12840 1032 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 NFRKBQ6P4R8 1299 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 TXNRD3Q86VQ6 643 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 AFAP1L1Q8TED9 768 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 COG1Q8WTW3 980 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 EXOC1Q9NV70 894 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 RWDD2AQ9UIY3 292 aa13.96□□□□□ -0.18
CDH3-202ENST00000429102 PACSIN2Q9UNF0 486 aaPredicted RBP13.96□□□□□ -0.18
CDH3-202ENST00000429102 KRT86O43790 486 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 LIG3P49916 1009 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 RRAGAQ7L523 313 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 MS4A14Q96JA4 679 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.95□□□□□ -0.18
CDH3-202ENST00000429102 NWD2Q9ULI1 1742 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 N4BP2Q86UW6 1770 aaPredicted RBP13.95□□□□□ -0.18
CDH3-202ENST00000429102 ATP8B1O43520 1251 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 TSPY3P0CV98 308 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 TSPY8P0CW00 308 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 PLCG1P19174 1290 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 PBX1P40424 430 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 GUCY2FP51841 1108 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 NAPAP54920 295 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 E2F4Q16254 413 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 WHAMMP3Q1A5X7 153 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 ANKRD40Q6AI12 368 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 PDXDC2PQ6P474 469 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 USP17L2Q6R6M4 530 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 SRLQ86TD4 932 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 SPATA20Q8TB22 786 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 TGFBRAP1Q8WUH2 860 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 CNOT6LQ96LI5 555 aaKnown RBP13.95□□□□□ -0.18
CDH3-202ENST00000429102 ACBD3Q9H3P7 528 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 SPAG1Q07617 926 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 NPY5RQ15761 445 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 SAMD1Q6SPF0 538 aaPredicted RBP13.95□□□□□ -0.18
CDH3-202ENST00000429102 GBP3Q9H0R5 595 aa13.95□□□□□ -0.18
CDH3-202ENST00000429102 FUT2Q10981 343 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 TXNRD1Q16881 649 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 SH3RF1Q7Z6J0 888 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 SH2D3CQ8N5H7 860 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 ZNF384Q8TF68 577 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 RUFY1Q96T51 708 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 RIOK1Q9BRS2 568 aaKnown RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 LRRC1Q9BTT6 524 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 DISC1Q9NRI5 854 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 ANKIB1Q9P2G1 1089 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 DMGDHQ9UI17 866 aaKnown RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 CDHR2Q9BYE9 1310 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 WDR59Q6PJI9 974 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 CACNA2D4Q7Z3S7 1137 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 ZNF444Q8N0Y2 327 aaPredicted RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 IPO4Q8TEX9 1081 aaKnown RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 FAM84BQ96KN1 310 aaPredicted RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 DCP1AQ9NPI6 582 aaPredicted RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 TCP11L1Q9NUJ3 509 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 ARFGEF2Q9Y6D5 1785 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 TNS3Q68CZ2 1445 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 CNTNAP5Q8WYK1 1306 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 RASSF7Q02833 373 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 LRRC31Q6UY01 552 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 CLEC10AQ8IUN9 316 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 NELFCDQ8IXH7 590 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 ZNF34Q8IZ26 560 aa13.94□□□□□ -0.18
CDH3-202ENST00000429102 CRNKL1Q9BZJ0 848 aaKnown RBP13.94□□□□□ -0.18
CDH3-202ENST00000429102 ZSCAN5CA6NGD5 496 aaPredicted RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 F8W031 263 aaPredicted RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 POTEB2H3BUK9 544 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 EPHB6O15197 1021 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 CYLC1P35663 651 aaPredicted RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 CABP7Q86V35 215 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 CDK5RAP3Q96JB5 506 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 RMND1Q9NWS8 449 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 TMEM260Q9NX78 707 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 LIMA1Q9UHB6 759 aaKnown RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 CAPN6Q9Y6Q1 641 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 EIF3CLB5ME19 914 aaKnown RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 GLIS3Q8NEA6 775 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 EIF3CQ99613 913 aaKnown RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 SELENOOQ9BVL4 669 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 GOLPH3Q9H4A6 298 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 CCDC87Q9NVE4 849 aa13.93□□□□□ -0.18
CDH3-202ENST00000429102 FRMPD2Q68DX3 1309 aaPredicted RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 MYO5AQ9Y4I1 1855 aaKnown RBP13.93□□□□□ -0.18
CDH3-202ENST00000429102 GOLGA6CA6NDK9 693 aa13.92□□□□□ -0.18
CDH3-202ENST00000429102 GOLGA6BA6NDN3 693 aa13.92□□□□□ -0.18
CDH3-202ENST00000429102 H7C1D1 291 aa13.92□□□□□ -0.18
CDH3-202ENST00000429102 GOLGA6DP0CG33 693 aa13.92□□□□□ -0.18
CDH3-202ENST00000429102 NKX1-1Q15270 411 aaPredicted RBP13.92□□□□□ -0.18
CDH3-202ENST00000429102 LRRC15Q8TF66 581 aa13.92□□□□□ -0.18
CDH3-202ENST00000429102 SECISBP2LQ93073 1101 aaKnown RBP13.92□□□□□ -0.18
CDH3-202ENST00000429102 IFIH1Q9BYX4 1025 aaKnown RBP13.92□□□□□ -0.18
CDH3-202ENST00000429102 RBM28Q9NW13 759 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms