RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 DBX1A6NMT0 343 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 BTBD11A6QL63 1104 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 FADS2P1A8MWK0 482 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 NRDCO43847 1150 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 TSPAN15O95858 294 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 CD3EP07766 207 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 IFNGR1P15260 489 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 CD247P20963 164 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 BMP8BP34820 402 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 GIPRP48546 466 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 GNPTABQ3T906 1256 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 HSF5Q4G112 596 aaPredicted RBP3.78□□□□□ -1.8
PTPRC-208ENST00000427110 ATG14Q6ZNE5 492 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 MCF2L2Q86YR7 1114 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 CILP2Q8IUL8 1156 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 TMEM52Q8NDY8 209 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 ANAPC16Q96DE5 110 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 SHDQ96IW2 340 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 SEC16BQ96JE7 1060 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 FCRL2Q96LA5 508 aaPredicted RBP3.78□□□□□ -1.8
PTPRC-208ENST00000427110 FGD4Q96M96 766 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 SLC12A9Q9BXP2 914 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 SLC6A17Q9H1V8 727 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 CWC22Q9HCG8 908 aaKnown RBP3.78□□□□□ -1.8
PTPRC-208ENST00000427110 STRIP2Q9ULQ0 834 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 MRVI1Q9Y6F6 885 aa3.78□□□□□ -1.8
PTPRC-208ENST00000427110 NFIBO00712 420 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 STK10O94804 968 aaKnown RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 GSNP06396 782 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 EPHX1P07099 455 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 FGRP09769 529 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 TMEM253P0C7T8 217 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 ITGA4P13612 1032 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 PRKCAP17252 672 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 CFPP27918 469 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 KIR2DL1P43626 348 aaPredicted RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 KIR2DL2P43627 348 aaPredicted RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 CWF19L1Q69YN2 538 aaKnown RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 SLCO6A1Q86UG4 719 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 IRF2BP1Q8IU81 584 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 LRRC56Q8IYG6 542 aaPredicted RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 NAT16Q8N8M0 369 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 KLHL6Q8WZ60 621 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 KCNN1Q92952 543 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 JMJD8Q96S16 334 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 PPP1R16BQ96T49 567 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 GMLQ99445 158 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 HAUS7Q99871 368 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 MCMBPQ9BTE3 642 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 LGR4Q9BXB1 951 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 IMPACTQ9P2X3 320 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 R3HCC1Q9Y3T6 440 aaKnown RBP3.77□□□□□ -1.81
PTPRC-208ENST00000427110 TAF6LQ9Y6J9 622 aa3.77□□□□□ -1.81
PTPRC-208ENST00000427110 OR14I1A6ND48 311 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 STXBP3O00186 592 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 IGSF3O75054 1194 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 VAMP4O75379 141 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 MSL3P1P0C860 447 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 SNX17Q15036 470 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 KCNA10Q16322 511 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 DPY19L1Q2PZI1 675 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 TMEM132EQ6IEE7 984 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 ADAT2Q7Z6V5 191 aaKnown RBP3.76□□□□□ -1.81
PTPRC-208ENST00000427110 ANKLE2Q86XL3 938 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 C1QL4Q86Z23 238 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 NUP43Q8NFH3 380 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 PMFBP1Q8TBY8 1022 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 UBXN4Q92575 508 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 SMARCC1Q92922 1105 aaPredicted RBP3.76□□□□□ -1.81
PTPRC-208ENST00000427110 FCRL3Q96P31 734 aaPredicted RBP3.76□□□□□ -1.81
PTPRC-208ENST00000427110 KLHL25Q9H0H3 589 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 ZNF552Q9H707 407 aaPredicted RBP3.76□□□□□ -1.81
PTPRC-208ENST00000427110 ZNF408Q9H9D4 720 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 CD320Q9NPF0 282 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 TNFRSF10DQ9UBN6 386 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 FHOD1Q9Y613 1164 aa3.76□□□□□ -1.81
PTPRC-208ENST00000427110 TCAF2A6NFQ2 919 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 NUDT19A8MXV4 375 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 TACR1P25103 407 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 VIPR1P32241 457 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 EPHB3P54753 998 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 DLG4P78352 724 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SRSF3P84103 164 aaKnown RBP3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SLC7A5Q01650 507 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 TCEAL1Q15170 157 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 ANKRD39Q53RE8 183 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 HEATR6Q6AI08 1181 aaKnown RBP3.75□□□□□ -1.81
PTPRC-208ENST00000427110 KIAA1211LQ6NV74 962 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 GALNT18Q6P9A2 607 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SPOCD1Q6ZMY3 1216 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 LCNL1Q6ZST4 164 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 CKAP2LQ8IYA6 745 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SLC26A8Q96RN1 970 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 DNAJC2Q99543 621 aaKnown RBP3.75□□□□□ -1.81
PTPRC-208ENST00000427110 GCM1Q9NP62 436 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 PRR13Q9NZ81 148 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 APEX2Q9UBZ4 518 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SUSD2Q9UGT4 822 aa3.75□□□□□ -1.81
PTPRC-208ENST00000427110 SMG5Q9UPR3 1016 aaKnown RBP3.75□□□□□ -1.81
PTPRC-208ENST00000427110 HCFC2Q9Y5Z7 792 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms