RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 ERVK-24P63145 666 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 NTRK3Q16288 839 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 QRICH1Q2TAL8 776 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 Q3C1V9 767 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 HOMER1Q86YM7 354 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 GPRC5AQ8NFJ5 357 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 PIBF1Q8WXW3 757 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 GTF3C6Q969F1 213 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 PIGSQ96S52 555 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 SPATC1LQ9H0A9 340 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 hCG_1642624A0A1W2PR95 340 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 GPR25O00155 361 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 ATP2A1O14983 1001 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 PPP1R11O60927 126 aaPredicted RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 ICAM1P05362 532 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 HSPA1AP0DMV8 641 aaKnown RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 HSPA1BP0DMV9 641 aaKnown RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 PLS1Q14651 629 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 SNRNP48Q6IEG0 339 aaKnown RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 CPXCR1Q8N123 301 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 ZSCAN31Q96LW9 406 aaPredicted RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 AGBL1Q96MI9 1066 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 MOV10L1Q9BXT6 1211 aaKnown RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 TEX13BQ9BXU2 312 aa14.04□□□□□ -0.16
LINC00539-202ENST00000423575 SH2B1Q9NRF2 756 aaPredicted RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 CTDP1Q9Y5B0 961 aaPredicted RBP14.04□□□□□ -0.16
LINC00539-202ENST00000423575 CPLX1O14810 134 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 ZBTB5O15062 677 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 FOXN1O15353 648 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 DTNBO60941 627 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 CTDNEP1O95476 244 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 IFNAR1P17181 557 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 STAT3P40763 770 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 MCM2P49736 904 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 OAZ1P54368 228 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 RIOX2Q8IUF8 465 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 CCDC83Q8IWF9 413 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 PHKBQ93100 1093 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 RRP36Q96EU6 259 aaKnown RBP14.03□□□□□ -0.16
LINC00539-202ENST00000423575 TMX3Q96JJ7 454 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 PORCNQ9H237 461 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 CCPG1Q9ULG6 757 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 RIPK3Q9Y572 518 aa14.03□□□□□ -0.16
LINC00539-202ENST00000423575 PNMA6FA0A0J9YX94 578 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 HSPA8P11142 646 aaKnown RBP14.02□□□□□ -0.17
LINC00539-202ENST00000423575 CAP1Q01518 475 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 SP3Q02447 781 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 NOM1Q5C9Z4 860 aaKnown RBP14.02□□□□□ -0.17
LINC00539-202ENST00000423575 SNX21Q969T3 373 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 SLC26A6Q9BXS9 759 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 ARHGAP39Q9C0H5 1083 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 EFCC1Q9HA90 598 aa14.02□□□□□ -0.17
LINC00539-202ENST00000423575 V9GY48 417 aaPredicted RBP14.02□□□□□ -0.17
LINC00539-202ENST00000423575 BAZ2BQ9UIF8 2168 aaKnown RBP14.02□□□□□ -0.17
LINC00539-202ENST00000423575 JAK2O60674 1132 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 ECM2O94769 699 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 FMNL1O95466 1100 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 ALAS1P13196 640 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 ERCC3P19447 782 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 CTGFP29279 349 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 SLC4A3P48751 1232 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 CCNA1P78396 465 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 LACTBP83111 547 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 USH1GQ495M9 461 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 CPLX2Q6PUV4 134 aaKnown RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 FBXO11Q86XK2 927 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 NSUN7Q8NE18 718 aaKnown RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 SHCBP1Q8NEM2 672 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 ZNF296Q8WUU4 475 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 RNF26Q9BY78 433 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 HOMER2Q9NSB8 354 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 RNF146Q9NTX7 359 aa14.01□□□□□ -0.17
LINC00539-202ENST00000423575 SEC63Q9UGP8 760 aaKnown RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 COL11A1P12107 1806 aaPredicted RBP14.01□□□□□ -0.17
LINC00539-202ENST00000423575 PTPDC1A2A3K4 754 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 PRPF3O43395 683 aaKnown RBP14□□□□□ -0.17
LINC00539-202ENST00000423575 FKTNO75072 461 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 CDKL5O76039 1030 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 SLC25A27O95847 323 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 PKN1Q16512 942 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 MUM1L1Q5H9M0 696 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 NCAPG2Q86XI2 1143 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 GPKOWQ92917 476 aaPredicted RBP eCLIP14□□□□□ -0.17
LINC00539-202ENST00000423575 AMNQ9BXJ7 453 aa14□□□□□ -0.17
LINC00539-202ENST00000423575 ABCB11O95342 1321 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 STK36Q9NRP7 1315 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 K7ELQ4 463 aaPredicted RBP13.99□□□□□ -0.17
LINC00539-202ENST00000423575 NFIBO00712 420 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 MAPK4P31152 587 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 COPB2P35606 906 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 CTCFP49711 727 aaPredicted RBP13.99□□□□□ -0.17
LINC00539-202ENST00000423575 SSRP1Q08945 709 aaKnown RBP13.99□□□□□ -0.17
LINC00539-202ENST00000423575 PFKFB3Q16875 520 aaPredicted RBP13.99□□□□□ -0.17
LINC00539-202ENST00000423575 TKFCQ3LXA3 575 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 WDR78Q5VTH9 848 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 WWC2Q6AWC2 1192 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 HEATR3Q7Z4Q2 680 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 TRIM22Q8IYM9 498 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 CD99L2Q8TCZ2 262 aa13.99□□□□□ -0.17
LINC00539-202ENST00000423575 CLEC4DQ8WXI8 215 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms