RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SLC7A5P2Q9GIP4 190 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PSTPIP2Q9H939 334 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TBC1D7Q9P0N9 293 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 K7ENM7 598 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 GNAT1P11488 350 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 POSTNQ15063 836 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 FAM98CQ17RN3 349 aaKnown RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 MFSD14BQ5SR56 506 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF772Q68DY9 489 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 SPATA5Q8NB90 893 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 MMTAG2Q9BU76 263 aaKnown RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PCDHA12Q9UN75 941 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 V9GY48 417 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ZMYM3Q14202 1370 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 CABP7Q86V35 215 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 CCDC13Q8IYE1 715 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 RPGRIP1Q96KN7 1286 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 RGS16O15492 202 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 GPAA1O43292 621 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CEP104O60308 925 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 NELFBQ8WX92 580 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 LRRIQ4A6NIV6 560 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 NDUFAB1O14561 156 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 PCP11498 1178 aaKnown RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 DDX5P17844 614 aaKnown RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 TBCCQ15814 346 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ACBD5Q5T8D3 534 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 FAM178BQ8IXR5 827 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 FNBP4Q8N3X1 1017 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 RNF139Q8WU17 664 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 DDX21Q9NR30 783 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 SUCLA2Q9P2R7 463 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 EYA2O00167 538 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 GNGT2O14610 69 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 GCP02774 474 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 OCM2P0CE71 109 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 OCMP0CE72 109 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CCND2P30279 289 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 AK2P54819 239 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 LONRF2Q1L5Z9 754 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 BEND3Q5T5X7 828 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 TMCO4Q5TGY1 634 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 KLC3Q6P597 504 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 XAGE2Q96GT9 111 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ALAS1P13196 640 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 HOXD10P28358 340 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 STX1BP61266 288 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CABLES1Q8TDN4 633 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 SUGCTQ9HAC7 445 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 DDX25Q9UHL0 483 aaKnown RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM35Q9UPQ4 493 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ARHGAP42A6NI28 874 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 TMCC1O94876 653 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 STX2P32856 288 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CASP2P42575 452 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ARHGAP44Q17R89 818 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF790Q6PG37 636 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 C2CD5Q86YS7 1000 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 LZICQ8WZA0 190 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 SPDL1Q96EA4 605 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 FAM89AQ96GI7 184 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 PGBD1Q96JS3 809 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 GSTA4O15217 222 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 EVI5O60447 810 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 ADCY8P40145 1251 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 IREB2P48200 963 aaKnown RBP7.49□□□□□ -1.21
SCN1A-204ENST00000423058 NLRP7Q8WX94 980 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 HOMER3Q9NSC5 361 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CFAP43Q8NDM7 1665 aa7.49□□□□□ -1.21
SCN1A-204ENST00000423058 CYP2J2P51589 502 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 RNASE9P60153 205 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 FBXO11Q86XK2 927 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 RBM46Q8TBY0 533 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 IFIH1Q9BYX4 1025 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SLC38A10Q9HBR0 1119 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 METTL14Q9HCE5 456 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PA2G4Q9UQ80 394 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 UNC13AQ9UPW8 1703 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ARL13BQ3SXY8 428 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ANKRD20A4Q4UJ75 823 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ANKRD20A8PQ5CZ79 823 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ANKRD20A2Q5SQ80 823 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ANKRD20A1Q5TYW2 823 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 GPBP1Q86WP2 473 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SNX21Q969T3 373 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SPZ1Q9BXG8 430 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM31Q9BZY9 425 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PANK4Q9NVE7 773 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 KDRP35968 1356 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SMCO2A6NFE2 343 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PMLP29590 882 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 RECQLP46063 649 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 TTC30AQ86WT1 665 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 OPTNQ96CV9 577 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 NRBF2Q96F24 287 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 TCEANC2Q96MN5 208 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SEPT9Q9UHD8 586 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 COL4A3BPQ9Y5P4 624 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 BLMP54132 1417 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 IFNB1P01574 187 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms