RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF473Q8WTR7 871 aaKnown RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 TNFRSF25Q93038 417 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 TSGA10Q9BZW7 698 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 SPATA31A3Q5VYP0 1347 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 MYCNP04198 464 aaPredicted RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 DNM2P50570 870 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 GUCY1A3Q02108 690 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 PTGDRQ13258 359 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 EP400NLQ6ZTU2 488 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 NUP133Q8WUM0 1156 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 CCDC85AQ96PX6 553 aaPredicted RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 OSBPL9Q96SU4 736 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 THAP9Q9H5L6 903 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 KLC4Q9NSK0 619 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 GGA2Q9UJY4 613 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 ZNF233A6NK53 670 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 PPP1R37O75864 691 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 ZBED6P86452 979 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 CDK17Q00537 523 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 NPY5RQ15761 445 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 PTGISQ16647 500 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 TTC38Q5R3I4 469 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 WLSQ5T9L3 541 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 RETREG2Q8NC44 543 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 MTA3Q9BTC8 594 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 POLD4Q9HCU8 107 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 ZNHIT6Q9NWK9 470 aaKnown RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 LRWD1Q9UFC0 647 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 RIPOR2Q9Y4F9 1068 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 NUTM2BA6NNL0 878 aaPredicted RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 NUTM2EB1AL46 878 aaPredicted RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 B4DLN1 442 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 PES1O00541 588 aaKnown RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 XBP1P17861 261 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 TRIM21P19474 475 aaKnown RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 ELF1P32519 619 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 KLK7P49862 253 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 IL17AQ16552 155 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 RRP12Q5JTH9 1297 aaKnown RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 CCDC13Q8IYE1 715 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 TMTC2Q8N394 836 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 GIMAP7Q8NHV1 300 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 MYCBPAPQ8TBZ2 947 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 PYM1Q9BRP8 204 aaKnown RBP11.93□□□□□ -0.5
USP54-204ENST00000422491 ISCA1Q9BUE6 129 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 SH2D4AQ9H788 454 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 SMARCAL1Q9NZC9 954 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 MYH2Q9UKX2 1941 aa11.93□□□□□ -0.5
USP54-204ENST00000422491 GSG1L2A8MUP6 293 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 TACC1O75410 805 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 PRDM1O75626 825 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 CSF1RP07333 972 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 TCP1P17987 556 aaKnown RBP11.92□□□□□ -0.5
USP54-204ENST00000422491 MATR3P43243 847 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP54-204ENST00000422491 APBA1Q02410 837 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 FUT2Q10981 343 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 CCDC40Q4G0X9 1142 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 METTL24Q5JXM2 366 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 NFRKBQ6P4R8 1299 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 C6orf89Q6UWU4 347 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 KRT26Q7Z3Y9 468 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 THEMISQ8N1K5 641 aaPredicted RBP11.92□□□□□ -0.5
USP54-204ENST00000422491 PIK3R5Q8WYR1 880 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 RBM33Q96EV2 1170 aaKnown RBP11.92□□□□□ -0.5
USP54-204ENST00000422491 NUP58Q9BVL2 599 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 EXOC1Q9NV70 894 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 EHD2Q9NZN4 543 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 ERICH2A1L162 156 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 CLSTN1O94985 981 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 MBD4O95243 580 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 CABP4P57796 275 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 HDLBPQ00341 1268 aaKnown RBP11.92□□□□□ -0.5
USP54-204ENST00000422491 IFIT5Q13325 482 aaKnown RBP11.92□□□□□ -0.5
USP54-204ENST00000422491 CD302Q8IX05 232 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 CCT8L2Q96SF2 557 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 MLXIPQ9HAP2 919 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 NLRP2Q9NX02 1062 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 HYOU1Q9Y4L1 999 aa11.92□□□□□ -0.5
USP54-204ENST00000422491 SRRM3A6NNA2 597 aaPredicted RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 NR1D1P20393 614 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 RDXP35241 583 aaKnown RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 SEC24CP53992 1094 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 CCDC96Q2M329 555 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 C8orf74Q6P047 294 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 NLRP14Q86W24 1093 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 VGLL2Q8N8G2 317 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 C1orf131Q8NDD1 294 aaKnown RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 ZNF622Q969S3 477 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP54-204ENST00000422491 CCDC43Q96MW1 224 aaKnown RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 PLA2G12BQ9BX93 195 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 GDF3Q9NR23 364 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 MOCS3O95396 460 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 FAM107AO95990 144 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 FAM153BP0C7A2 387 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 ARID4AP29374 1257 aaPredicted RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 CXCR5P32302 372 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 MDH1P40925 334 aaKnown RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 DRP2Q13474 957 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 FAM153CQ494X1 144 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 GLE1Q53GS7 698 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms