RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 EPHB4P54760 987 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 FAAP100Q0VG06 881 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 CCDC129Q6ZRS4 1044 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 ANKRD33Q7Z3H0 272 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 NUP133Q8WUM0 1156 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 TOX2Q96NM4 488 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 ABHD16BQ9H3Z7 469 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 INCENPQ9NQS7 918 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 HOMER2Q9NSB8 354 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 TMEM39AQ9NV64 488 aa17.6■□□□□ 0.41
RPS28-201ENST00000417088 ZNF536O15090 1300 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 RAG1P15918 1043 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 MCCP23508 829 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 CST5P28325 142 aaPredicted RBP17.59■□□□□ 0.41
RPS28-201ENST00000417088 SLC1A4P43007 532 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 STAT2P52630 851 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 SMAD3P84022 425 aaKnown RBP17.59■□□□□ 0.41
RPS28-201ENST00000417088 CNTN2Q02246 1040 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 CTDSPL2Q05D32 466 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 CCDC144BQ3MJ40 725 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 ARMCX2Q7L311 632 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 FAM160B2Q86V87 743 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 CHURC1Q8WUH1 139 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 STAG1Q8WVM7 1258 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 CHMP4CQ96CF2 233 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 AGBL1Q96MI9 1066 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 KATNBL1Q9H079 304 aa17.59■□□□□ 0.41
RPS28-201ENST00000417088 ISY1Q9ULR0 285 aaKnown RBP17.59■□□□□ 0.41
RPS28-201ENST00000417088 DCDC2CA8MYV0 355 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 C6orf222P0C671 652 aaPredicted RBP17.58■□□□□ 0.4
RPS28-201ENST00000417088 GJA9P57773 515 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 FAM133AQ8N9E0 248 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 UPF3AQ9H1J1 476 aaKnown RBP17.58■□□□□ 0.4
RPS28-201ENST00000417088 SEMA6BQ9H3T3 888 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 ACAD9Q9H845 621 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 A1CFQ9NQ94 594 aaKnown RBP17.58■□□□□ 0.4
RPS28-201ENST00000417088 IL17RBQ9NRM6 502 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 RNF146Q9NTX7 359 aa17.58■□□□□ 0.4
RPS28-201ENST00000417088 MCM3APO60318 1980 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 ELP1O95163 1332 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 TSPY2A6NKD2 308 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 NMT2O60551 498 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 PLA2G6O60733 806 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 ASGR1P07306 291 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 CDK7P50613 346 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 FPGSQ05932 587 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 IKQ13123 557 aaPredicted RBP17.57■□□□□ 0.4
RPS28-201ENST00000417088 PPP4R3BQ5MIZ7 849 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 ANKRD45Q5TZF3 282 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 VPS53Q5VIR6 699 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 RCSD1Q6JBY9 416 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 KCTD1Q719H9 257 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 PCSK9Q8NBP7 692 aaKnown RBP17.57■□□□□ 0.4
RPS28-201ENST00000417088 GLT1D1Q96MS3 346 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 CDX2Q99626 313 aaPredicted RBP17.57■□□□□ 0.4
RPS28-201ENST00000417088 SPC25Q9HBM1 224 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 STX8Q9UNK0 236 aa17.57■□□□□ 0.4
RPS28-201ENST00000417088 SOWAHBA6NEL2 793 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 CTAGE5O15320 804 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 RRP1P56182 461 aaKnown RBP17.56■□□□□ 0.4
RPS28-201ENST00000417088 SNAP25P60880 206 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 TKFCQ3LXA3 575 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 GNASQ5JWF2 1037 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 RASGRP2Q7LDG7 609 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 EVI5LQ96CN4 794 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 RNPC3Q96LT9 517 aaKnown RBP17.56■□□□□ 0.4
RPS28-201ENST00000417088 TTYH1Q9H313 450 aaPredicted RBP17.56■□□□□ 0.4
RPS28-201ENST00000417088 ANAPC4Q9UJX5 808 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 TBX21Q9UL17 535 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 UNC80Q8N2C7 3258 aa17.56■□□□□ 0.4
RPS28-201ENST00000417088 RANBP6O60518 1105 aaKnown RBP17.55■□□□□ 0.4
RPS28-201ENST00000417088 ALAS1P13196 640 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 NOVP48745 357 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 NKX3-2P78367 333 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 CCDC174Q6PII3 467 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 TRERF1Q96PN7 1200 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 PRR12Q9ULL5 1215 aa17.55■□□□□ 0.4
RPS28-201ENST00000417088 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.54■□□□□ 0.4
RPS28-201ENST00000417088 ARVCFO00192 962 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 ORC4O43929 436 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 TIMP1P01033 207 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 FGRP09769 529 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 ALX1Q15699 326 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 MUM1L1Q5H9M0 696 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.54■□□□□ 0.4
RPS28-201ENST00000417088 VTI1AQ96AJ9 217 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 CRBNQ96SW2 442 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 HELLSQ9NRZ9 838 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
RPS28-201ENST00000417088 MTMR7Q9Y216 660 aa17.54■□□□□ 0.4
RPS28-201ENST00000417088 ASTN1O14525 1302 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 MROH7Q68CQ1 1323 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 A0A0U1RQG5 324 aaPredicted RBP17.53■□□□□ 0.4
RPS28-201ENST00000417088 ASB14A6NK59 587 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 PDE1AP54750 535 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 BEX3Q00994 111 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 TNFAIP2Q03169 654 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 CYP39A1Q9NYL5 469 aa17.53■□□□□ 0.4
RPS28-201ENST00000417088 DDX49Q9Y6V7 483 aaKnown RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms