RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 SPATS2Q86XZ4 545 aaKnown RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 BLIDQ8IZY5 108 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 SPTLC3Q9NUV7 552 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 PCDHA5Q9Y5H7 936 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 PTGDRQ13258 359 aa13.21□□□□□ -0.3
UBR4-205ENST00000417040 LRRC41Q15345 812 aa13.21□□□□□ -0.3
UBR4-205ENST00000417040 EPC1Q9H2F5 836 aa13.21□□□□□ -0.3
UBR4-205ENST00000417040 WDR70Q9NW82 654 aa13.21□□□□□ -0.3
UBR4-205ENST00000417040 M0R2C6 588 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 MESDQ14696 234 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 SLC24A3Q9HC58 644 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 TMED2Q15363 201 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 RNF168Q8IYW5 571 aaPredicted RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 JRKLQ9Y4A0 524 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 KDRP35968 1356 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 WDR91A4D1P6 747 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 GCP02774 474 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 TRIP13Q15645 432 aaPredicted RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 PRR16Q569H4 304 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 ZNF589Q86UQ0 364 aaPredicted RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 TCP1P17987 556 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 TAF12Q16514 161 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 LRRC24Q50LG9 513 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 SCYL3Q8IZE3 742 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 NUCKS1Q9H1E3 243 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 SPATS2LQ9NUQ6 558 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 LUC7L3O95232 432 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 PHBP35232 272 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 TMED1Q13445 227 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 TAF11Q15544 211 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 REXO1Q8N1G1 1221 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 AP1M1Q9BXS5 423 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 USP44Q9H0E7 712 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 XAB2Q9HCS7 855 aaKnown RBP13.2□□□□□ -0.3
UBR4-205ENST00000417040 WDR7Q9Y4E6 1490 aa13.2□□□□□ -0.3
UBR4-205ENST00000417040 NEURL1BA8MQ27 555 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 GIPC1O14908 333 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 PRPF6O94906 941 aaKnown RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 SLC1A4P43007 532 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 TOGARAM2Q6ZUX3 1019 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 IFNL3Q8IZI9 196 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 RASGRP4Q8TDF6 673 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 H7C1D1 291 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 TRPA1O75762 1119 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 GNA14O95837 355 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 PLTPP55058 493 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 HDLBPQ00341 1268 aaKnown RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 ADAM9Q13443 819 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 DDB1Q16531 1140 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 DBN1Q16643 649 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 PDZD8Q8NEN9 1154 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 LPIN2Q92539 896 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 SRGAP2O75044 1071 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 FGAP02671 866 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 IP6K1Q92551 441 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 NOVA2Q9UNW9 492 aaKnown RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 RTCBQ9Y3I0 505 aaKnown RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 GRK7Q8WTQ7 553 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 DACT3Q96B18 629 aaPredicted RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 TUBGCP2Q9BSJ2 902 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 CARMIL3Q8ND23 1372 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 GTPBP6O43824 516 aaPredicted RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 SUN1O94901 812 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 PNMA6AP0CW24 399 aaPredicted RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 CASP8Q14790 479 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 RIC8AQ9NPQ8 531 aa13.19□□□□□ -0.3
UBR4-205ENST00000417040 DNAJC17Q9NVM6 304 aaKnown RBP13.19□□□□□ -0.3
UBR4-205ENST00000417040 TNRQ92752 1358 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 DLATP10515 647 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 RPS6KA2Q15349 733 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 SMYD2Q9NRG4 433 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 ZBTB22O15209 634 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 GNPATO15228 680 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 STAM2O75886 525 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 CASP2P42575 452 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 ATP2A3Q93084 1043 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 PGBD1Q96JS3 809 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 MAD1L1Q9Y6D9 718 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 YTHDC2Q9H6S0 1430 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 LRRC47Q8N1G4 583 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 FANCBQ8NB91 859 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 MAIP1Q8WWC4 291 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 RBM17Q96I25 401 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.18□□□□□ -0.3
UBR4-205ENST00000417040 SYNJ2BP-COX16A0A087WUM0 186 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 USP17L12C9JPN9 530 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 USP17L21D6R901 530 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 K7ENM7 598 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 EPHB4P54760 987 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 MIER3Q7Z3K6 550 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 COX16Q9P0S2 106 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 EEF1GP26641 437 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 SLC12A2P55011 1212 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 ZNF449Q6P9G9 518 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 ZNF148Q9UQR1 794 aa13.18□□□□□ -0.3
UBR4-205ENST00000417040 THRAP3Q9Y2W1 955 aaKnown RBP13.18□□□□□ -0.3
UBR4-205ENST00000417040 PCDH11XQ9BZA7 1347 aa13.17□□□□□ -0.3
UBR4-205ENST00000417040 PCDH11YQ9BZA8 1340 aa13.17□□□□□ -0.3
UBR4-205ENST00000417040 SSH2Q76I76 1423 aa13.17□□□□□ -0.3
UBR4-205ENST00000417040 SETSIPP0DME0 302 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms