RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RRP36Q96EU6 259 aaKnown RBP15.06■□□□□ 0
VPS54-203ENST00000409558 PCNTO95613 3336 aa15.06■□□□□ 0
VPS54-203ENST00000409558 MYH3P11055 1940 aa15.06■□□□□ 0
VPS54-203ENST00000409558 KIF2AO00139 706 aaPredicted RBP15.06■□□□□ 0
VPS54-203ENST00000409558 KIF5CO60282 957 aa15.06■□□□□ 0
VPS54-203ENST00000409558 ARID5AQ03989 594 aa15.06■□□□□ 0
VPS54-203ENST00000409558 PTPROQ16827 1216 aa15.06■□□□□ 0
VPS54-203ENST00000409558 GSDMAQ96QA5 445 aa15.06■□□□□ 0
VPS54-203ENST00000409558 ZC3H12CQ9C0D7 883 aaKnown RBP15.06■□□□□ 0
VPS54-203ENST00000409558 DISC1Q9NRI5 854 aa15.06■□□□□ 0
VPS54-203ENST00000409558 PHACTR2O75167 634 aa15.06■□□□□ 0
VPS54-203ENST00000409558 ADD3Q9UEY8 706 aaKnown RBP15.06■□□□□ 0
VPS54-203ENST00000409558 PARP3Q9Y6F1 533 aa15.06■□□□□ 0
VPS54-203ENST00000409558 MACROD2A1Z1Q3 448 aa15.06■□□□□ 0
VPS54-203ENST00000409558 ZMYND10O75800 440 aa15.06■□□□□ 0
VPS54-203ENST00000409558 ZSCAN20P17040 1043 aaPredicted RBP15.06■□□□□ 0
VPS54-203ENST00000409558 ANKRD13CQ8N6S4 541 aa15.06■□□□□ 0
VPS54-203ENST00000409558 LRRC15Q8TF66 581 aa15.06■□□□□ 0
VPS54-203ENST00000409558 TNFRSF25Q93038 417 aa15.06■□□□□ 0
VPS54-203ENST00000409558 FAM207AQ9NSI2 230 aaPredicted RBP15.06■□□□□ 0
VPS54-203ENST00000409558 ZNF446Q9NWS9 450 aa15.06■□□□□ 0
VPS54-203ENST00000409558 HDAC6Q9UBN7 1215 aa15.06■□□□□ 0
VPS54-203ENST00000409558 SRGAP2O75044 1071 aa15.05■□□□□ 0
VPS54-203ENST00000409558 USP40Q9NVE5 1235 aa15.05■□□□□ 0
VPS54-203ENST00000409558 MATR3P43243 847 aaKnown RBP eCLIP15.05■□□□□ -08e-7■■■□□ 17.3
VPS54-203ENST00000409558 STK4Q13043 487 aa15.05■□□□□ -0
VPS54-203ENST00000409558 USH1GQ495M9 461 aa15.05■□□□□ -0
VPS54-203ENST00000409558 SLC10A5Q5PT55 438 aa15.05■□□□□ -0
VPS54-203ENST00000409558 SUGCTQ9HAC7 445 aa15.05■□□□□ -0
VPS54-203ENST00000409558 EXOC1Q9NV70 894 aa15.05■□□□□ -0
VPS54-203ENST00000409558 STX10O60499 249 aa15.05■□□□□ -0
VPS54-203ENST00000409558 NELFCDQ8IXH7 590 aa15.05■□□□□ -0
VPS54-203ENST00000409558 FLT1P17948 1338 aa15.05■□□□□ -0
VPS54-203ENST00000409558 CICQ96RK0 1608 aaPredicted RBP15.04■□□□□ -0
VPS54-203ENST00000409558 A0A1B0GTH6 734 aa15.04■□□□□ -0
VPS54-203ENST00000409558 GTPBP6O43824 516 aaPredicted RBP15.04■□□□□ -0
VPS54-203ENST00000409558 ERCC5P28715 1186 aaPredicted RBP15.04■□□□□ -0
VPS54-203ENST00000409558 PDXDC2PQ6P474 469 aa15.04■□□□□ -0
VPS54-203ENST00000409558 SPICE1Q8N0Z3 855 aa15.04■□□□□ -0
VPS54-203ENST00000409558 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.04■□□□□ -0
VPS54-203ENST00000409558 FAM237AA0A1B0GTK4 181 aa15.04■□□□□ -0
VPS54-203ENST00000409558 NAP1L1P55209 391 aaKnown RBP15.04■□□□□ -0
VPS54-203ENST00000409558 GSTO1P78417 241 aa15.04■□□□□ -0
VPS54-203ENST00000409558 PPP2R5BQ15173 497 aa15.04■□□□□ -0
VPS54-203ENST00000409558 NONOQ15233 471 aaKnown RBP eCLIP15.04■□□□□ -0
VPS54-203ENST00000409558 NCAPH2Q6IBW4 605 aa15.04■□□□□ -0
VPS54-203ENST00000409558 GLIS3Q8NEA6 775 aa15.04■□□□□ -0
VPS54-203ENST00000409558 OGFRQ9NZT2 677 aa15.04■□□□□ -0
VPS54-203ENST00000409558 STXBP3O00186 592 aa15.04■□□□□ -0
VPS54-203ENST00000409558 CCP110O43303 1012 aa15.04■□□□□ -0
VPS54-203ENST00000409558 NFIAQ12857 509 aa15.04■□□□□ -0
VPS54-203ENST00000409558 CCDC155Q8N6L0 562 aa15.04■□□□□ -0
VPS54-203ENST00000409558 RTFDC1Q9BY42 306 aaPredicted RBP15.04■□□□□ -0
VPS54-203ENST00000409558 MMRN2Q9H8L6 949 aa15.04■□□□□ -0
VPS54-203ENST00000409558 AGPAT5Q9NUQ2 364 aa15.04■□□□□ -0
VPS54-203ENST00000409558 USP17L15C9J2P7 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L13C9JLJ4 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L11C9JVI0 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L18D6R9N7 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L22D6RA61 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L17D6RBQ6 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L19D6RCP7 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L20D6RJB6 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 TBC1D8BQ0IIM8 1120 aa15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L24Q0WX57 530 aa15.03■□□□□ -0
VPS54-203ENST00000409558 ZYXQ15942 572 aaKnown RBP15.03■□□□□ -0
VPS54-203ENST00000409558 USP17L6PQ6QN14 398 aa15.03■□□□□ -0
VPS54-203ENST00000409558 KIAA1328Q86T90 577 aa15.03■□□□□ -0
VPS54-203ENST00000409558 KRT222Q8N1A0 295 aa15.03■□□□□ -0
VPS54-203ENST00000409558 REXO1Q8N1G1 1221 aaKnown RBP15.03■□□□□ -0
VPS54-203ENST00000409558 TRIML1Q8N9V2 468 aa15.03■□□□□ -0
VPS54-203ENST00000409558 CRACR2AQ9BSW2 395 aa15.03■□□□□ -0
VPS54-203ENST00000409558 C6orf50Q9HD87 102 aa15.03■□□□□ -0
VPS54-203ENST00000409558 TTC26A0AVF1 554 aa15.03■□□□□ -0
VPS54-203ENST00000409558 SEMA3EO15041 775 aa15.03■□□□□ -0
VPS54-203ENST00000409558 MFAP3LO75121 409 aa15.03■□□□□ -0
VPS54-203ENST00000409558 BMP15O95972 392 aa15.03■□□□□ -0
VPS54-203ENST00000409558 ERVK-24P63145 666 aa15.03■□□□□ -0
VPS54-203ENST00000409558 TCP11X2Q5H9J9 407 aa15.03■□□□□ -0
VPS54-203ENST00000409558 DGKHQ86XP1 1220 aa15.03■□□□□ -0
VPS54-203ENST00000409558 ZFPM1Q8IX07 1006 aa15.03■□□□□ -0
VPS54-203ENST00000409558 CCDC148Q8NFR7 591 aa15.03■□□□□ -0
VPS54-203ENST00000409558 TBC1D16Q8TBP0 767 aa15.03■□□□□ -0
VPS54-203ENST00000409558 DDX4Q9NQI0 724 aaKnown RBP15.03■□□□□ -0
VPS54-203ENST00000409558 GDF11O95390 407 aa15.03■□□□□ -0
VPS54-203ENST00000409558 GYS1P13807 737 aa15.03■□□□□ -0
VPS54-203ENST00000409558 NAALADL2Q58DX5 795 aa15.03■□□□□ -0
VPS54-203ENST00000409558 NOC3LQ8WTT2 800 aaKnown RBP15.03■□□□□ -0
VPS54-203ENST00000409558 NUDT12Q9BQG2 462 aa15.03■□□□□ -0
VPS54-203ENST00000409558 ADGRG1Q9Y653 693 aa15.03■□□□□ -0
VPS54-203ENST00000409558 CNTNAP4Q9C0A0 1308 aa15.03■□□□□ -0
VPS54-203ENST00000409558 PSMA7O14818 248 aa15.03■□□□□ -0
VPS54-203ENST00000409558 STIM1Q13586 685 aa15.03■□□□□ -0
VPS54-203ENST00000409558 VPS72Q15906 364 aa15.03■□□□□ -0
VPS54-203ENST00000409558 E2F4Q16254 413 aa15.03■□□□□ -0
VPS54-203ENST00000409558 DDX41Q9UJV9 622 aaKnown RBP15.03■□□□□ -0
VPS54-203ENST00000409558 GRM4Q14833 912 aa15.02■□□□□ -0
VPS54-203ENST00000409558 BARHL2Q9NY43 387 aa15.02■□□□□ -0
VPS54-203ENST00000409558 LRWD1Q9UFC0 647 aa15.02■□□□□ -0
VPS54-203ENST00000409558 LEMD3Q9Y2U8 911 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms