RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RNF26Q9BY78 433 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 MRPL44Q9H9J2 332 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 VEZTQ9HBM0 779 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 BAIAP2L1Q9UHR4 511 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 A0A1W2PP64 1363 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 AATKQ6ZMQ8 1374 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 RNF8O76064 485 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ALDH1B1P30837 517 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 TFDP1Q14186 410 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 PLCB4Q15147 1175 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 GPATCH4Q5T3I0 446 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF790Q6PG37 636 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 CDC37L1Q7L3B6 337 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 LRRC8AQ8IWT6 810 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 MORC4Q8TE76 937 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 MRPL47Q9HD33 250 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 HESX1Q9UBX0 185 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 EPN1Q9Y6I3 576 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 RFX7Q2KHR2 1363 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 CTTNBP2Q8WZ74 1663 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 SLC26A4O43511 780 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 S100BP04271 92 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 SLC1A4P43007 532 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 NEK8Q86SG6 692 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 CDHR1Q96JP9 859 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 XPO4Q9C0E2 1151 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 TMEM206Q9H813 350 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 GPHNQ9NQX3 736 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 NDE1Q9NXR1 346 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 TAB2Q9NYJ8 693 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 AFG3L2Q9Y4W6 797 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ARHGAP42A6NI28 874 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 B4E1Z4 1266 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 NOP56O00567 594 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 LPXNO60711 386 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TBC1D8O95759 1140 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 IL13P35225 146 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 RASA3Q14644 834 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF449Q6P9G9 518 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TRIM50Q86XT4 487 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PANX2Q96RD6 677 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ADPGKQ9BRR6 497 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TRIM4Q9C037 500 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 BCL2L12Q9HB09 334 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SPC25Q9HBM1 224 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 FAF1Q9UNN5 650 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 CAPN7Q9Y6W3 813 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 IVNS1ABPQ9Y6Y0 642 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 YEATS2Q9ULM3 1422 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ATP10BO94823 1461 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ITGA6P23229 1130 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PPARGP37231 505 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 MTX1Q13505 466 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PRR16Q569H4 304 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 RRAGAQ7L523 313 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TTC39CQ8N584 583 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 LARP6Q9BRS8 491 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 THAP9Q9H5L6 903 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SERPINA10Q9UK55 444 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PER1O15534 1290 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 GCNT3O95395 438 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TXKP42681 527 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ADCY2Q08462 1091 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ASPRV1Q53RT3 343 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TRAPPC3LQ5T215 181 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 DCAF15Q66K64 600 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 CNBD1Q8NA66 436 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SPATA5Q8NB90 893 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 DEPTORQ8TB45 409 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 BCAS4Q8TDM0 211 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 DDX27Q96GQ7 796 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 GDAP1L1Q96MZ0 367 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 MTRQ99707 1265 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SLF1Q9BQI6 1058 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TRIM56Q9BRZ2 755 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 LSM14BQ9BX40 385 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 WDR11Q9BZH6 1224 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 NRBP2Q9NSY0 501 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ATP8B3O60423 1300 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ANO9A1A5B4 782 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PFKFB1P16118 471 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 DDX5P17844 614 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PTPREP23469 700 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 GCKP35557 465 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PTK2Q05397 1052 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PICALMQ13492 652 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ZKSCAN8Q15776 578 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 FAM160B1Q5W0V3 765 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PIP4K2CQ8TBX8 421 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 EYA1Q99502 592 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TRIM6Q9C030 488 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SCOCQ9UIL1 159 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 E7EWF7 191 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 MED7O43513 233 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ATP2B4P23634 1241 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ANXA13P27216 316 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ADCY8P40145 1251 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 DYNC1I2Q13409 638 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 C6orf118Q5T5N4 469 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms