RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 USP17L11C9JVI0 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L18D6R9N7 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L22D6RA61 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L17D6RBQ6 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L19D6RCP7 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L20D6RJB6 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 PLA2G6O60733 806 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 PPFIA3O75145 1194 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 SSRP1Q08945 709 aaKnown RBP17.14■□□□□ 0.33
CAPN3-207ENST00000397200 USP17L24Q0WX57 530 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 FUT2Q10981 343 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 TREML2Q5T2D2 321 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 BTNL9Q6UXG8 535 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 TRIM22Q8IYM9 498 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 FAM43AQ8N2R8 423 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 FBXO18Q8NFZ0 1043 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 MS4A4AQ96JQ5 239 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 PGBD1Q96JS3 809 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 SLC26A6Q9BXS9 759 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 PARP14Q460N5 1801 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 CCL15-CCL14A0A0B4J2E2 113 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 FLOT1O75955 427 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 AKAP17AQ02040 695 aaKnown RBP17.14■□□□□ 0.33
CAPN3-207ENST00000397200 MOGSQ13724 837 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 CCL15Q16663 113 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 SYDE2Q5VT97 1194 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
CAPN3-207ENST00000397200 SLF1Q9BQI6 1058 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 RIOX1Q9H6W3 641 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 VAT1LQ9HCJ6 419 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 TFIP11Q9UBB9 837 aaKnown RBP17.14■□□□□ 0.33
CAPN3-207ENST00000397200 AGTPBP1Q9UPW5 1226 aa17.14■□□□□ 0.33
CAPN3-207ENST00000397200 RASSF10A6NK89 507 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 CYTH3O43739 400 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 FMNL1O95466 1100 aaPredicted RBP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 LIG1P18858 919 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 PABPC4Q13310 644 aaKnown RBP eCLIP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 SLC35G1Q2M3R5 365 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 DEFB115Q30KQ5 88 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 CATSPERGQ6ZRH7 1159 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 RBM43Q6ZSC3 357 aaKnown RBP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 ADGRF4Q8IZF3 695 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 KIFC2Q96AC6 838 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 C8orf76Q96K31 380 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 ZNF396Q96N95 335 aaPredicted RBP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 RNF26Q9BY78 433 aaPredicted RBP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 DDX19AQ9NUU7 478 aaKnown RBP17.13■□□□□ 0.33
CAPN3-207ENST00000397200 FBXO28Q9NVF7 368 aa17.13■□□□□ 0.33
CAPN3-207ENST00000397200 MANSC4A6NHS7 340 aaPredicted RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 FAM155AB1AL88 458 aaPredicted RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 PRPF3O43395 683 aaKnown RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 HOXA7P31268 230 aaPredicted RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 GRM1Q13255 1194 aa17.12■□□□□ 0.33
CAPN3-207ENST00000397200 CYP4F22Q6NT55 531 aa17.12■□□□□ 0.33
CAPN3-207ENST00000397200 PRPF38AQ8NAV1 312 aaKnown RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 PIBF1Q8WXW3 757 aa17.12■□□□□ 0.33
CAPN3-207ENST00000397200 BRI3BPQ8WY22 251 aa17.12■□□□□ 0.33
CAPN3-207ENST00000397200 RRP36Q96EU6 259 aaKnown RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 SEC63Q9UGP8 760 aaKnown RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 PRR12Q9ULL5 1215 aa17.12■□□□□ 0.33
CAPN3-207ENST00000397200 V9GY48 417 aaPredicted RBP17.12■□□□□ 0.33
CAPN3-207ENST00000397200 COG2Q14746 738 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 GPAT2Q6NUI2 795 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 BRAPQ7Z569 592 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 HOMER1Q86YM7 354 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 ANP32BQ92688 251 aaKnown RBP17.11■□□□□ 0.33
CAPN3-207ENST00000397200 USP28Q96RU2 1077 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 JMJD4Q9H9V9 463 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 PPP1R9AQ9ULJ8 1098 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 RLFQ13129 1914 aa17.11■□□□□ 0.33
CAPN3-207ENST00000397200 hCG_1642624A0A1W2PR95 340 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 DEXIO95424 95 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 OSBPP22059 807 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 IRX3P78415 501 aaPredicted RBP17.1■□□□□ 0.33
CAPN3-207ENST00000397200 UVSSAQ2YD98 709 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 PIGSQ96S52 555 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 MYPNQ86TC9 1320 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 TESPA1A2RU30 521 aaPredicted RBP17.1■□□□□ 0.33
CAPN3-207ENST00000397200 BTBD19C9JJ37 291 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 DSG3P32926 999 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 FOSBP53539 338 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 CDC37Q16543 378 aaPredicted RBP17.1■□□□□ 0.33
CAPN3-207ENST00000397200 ANKRD23Q86SG2 305 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 WASF1Q92558 559 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 NUP62CLQ9H1M0 184 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 HOXC10Q9NYD6 342 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 RTEL1Q9NZ71 1219 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 SLC45A1Q9Y2W3 748 aa17.1■□□□□ 0.33
CAPN3-207ENST00000397200 CTDP1Q9Y5B0 961 aaPredicted RBP17.1■□□□□ 0.33
CAPN3-207ENST00000397200 ZBTB5O15062 677 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 INHBEP58166 350 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 GUCY1B3Q02153 619 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 KIF23Q02241 960 aaPredicted RBP17.09■□□□□ 0.33
CAPN3-207ENST00000397200 SREBF2Q12772 1141 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 MTMR8Q96EF0 704 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 CAPNS2Q96L46 248 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 ASCC2Q9H1I8 757 aaPredicted RBP17.09■□□□□ 0.33
CAPN3-207ENST00000397200 RANBP17Q9H2T7 1088 aaKnown RBP17.09■□□□□ 0.33
CAPN3-207ENST00000397200 CLSTN2Q9H4D0 955 aa17.09■□□□□ 0.33
CAPN3-207ENST00000397200 PNMA3Q9UL41 463 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms