RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CDC25BP30305 580 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 PRPHP41219 470 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 SLC1A4P43007 532 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 MMP14P50281 582 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 CXCL9Q07325 125 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 KCTD1Q719H9 257 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 JDP2Q8WYK2 163 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.63■■■□□ 2.17
SHOX2-201ENST00000389589 EIF2AK3Q9NZJ5 1116 aaKnown RBP28.63■■■□□ 2.17
SHOX2-201ENST00000389589 GDF11O95390 407 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 SARSP49591 514 aaKnown RBP28.63■■■□□ 2.17
SHOX2-201ENST00000389589 IL17AQ16552 155 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 DTHD1Q6ZMT9 781 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 SIAH1Q8IUQ4 282 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 COA7Q96BR5 231 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 A0A087X0B3 334 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 SMC2O95347 1197 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 TXLNAP40222 546 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 CIAPIN1Q6FI81 312 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 NEK8Q86SG6 692 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 SHROOM1Q2M3G4 852 aaPredicted RBP28.62■■■□□ 2.17
SHOX2-201ENST00000389589 IQUBQ8NA54 791 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 MRFAP1L1Q96HT8 127 aa28.62■■■□□ 2.17
SHOX2-201ENST00000389589 MYO1BO43795 1136 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 ISM2Q6H9L7 571 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 SH3RF1Q7Z6J0 888 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 SPATA20Q8TB22 786 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 RIC8AQ9NPQ8 531 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP28.61■■■□□ 2.17
SHOX2-201ENST00000389589 CNTNAP1P78357 1384 aa28.61■■■□□ 2.17
SHOX2-201ENST00000389589 GH2P01242 217 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 SLC16A2P36021 539 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 FAM83AQ86UY5 434 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 GMCL1Q96IK5 515 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 BIN2Q9UBW5 565 aaPredicted RBP28.6■■■□□ 2.17
SHOX2-201ENST00000389589 MAN1B1Q9UKM7 699 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 CD2APQ9Y5K6 639 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 USP17L10C9JJH3 530 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 PRR29P0C7W0 189 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 TNIP1Q15025 636 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 DACH1Q9UI36 760 aa28.6■■■□□ 2.17
SHOX2-201ENST00000389589 PAGE5Q96GU1 130 aa28.59■■■□□ 2.17
SHOX2-201ENST00000389589 ZBED3Q96IU2 234 aaPredicted RBP28.59■■■□□ 2.17
SHOX2-201ENST00000389589 GLT8D2Q9H1C3 349 aa28.59■■■□□ 2.17
SHOX2-201ENST00000389589 F5H6K3 240 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 RAD21O60216 631 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 KLRC3Q07444 240 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 LETM2Q2VYF4 491 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 JAKMIP3Q5VZ66 844 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 DRC7Q8IY82 874 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 MLKLQ8NB16 471 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 SPC24Q8NBT2 197 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 TBCKQ8TEA7 893 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 ZNF500O60304 480 aaPredicted RBP28.58■■■□□ 2.17
SHOX2-201ENST00000389589 CCNT1O60563 726 aaKnown RBP28.58■■■□□ 2.17
SHOX2-201ENST00000389589 MORC3Q14149 939 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 E2F4Q16254 413 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 TMEM60Q9H2L4 133 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 VEZTQ9HBM0 779 aa28.58■■■□□ 2.17
SHOX2-201ENST00000389589 TBC1D12O60347 775 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 PPP1R11O60927 126 aaPredicted RBP28.57■■■□□ 2.16
SHOX2-201ENST00000389589 MRPL12P52815 198 aaKnown RBP28.57■■■□□ 2.16
SHOX2-201ENST00000389589 NCAPHQ15003 741 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 GRAMD1CQ8IYS0 662 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 CUL5Q93034 780 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 NEMFO60524 1076 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 MYL5Q02045 173 aa28.57■■■□□ 2.16
SHOX2-201ENST00000389589 PPP1R1BQ9UD71 204 aaPredicted RBP28.57■■■□□ 2.16
SHOX2-201ENST00000389589 OR52Z1P0C646 297 aa28.56■■■□□ 2.16
SHOX2-201ENST00000389589 RRP1BQ14684 758 aaKnown RBP28.56■■■□□ 2.16
SHOX2-201ENST00000389589 AK8Q96MA6 479 aa28.56■■■□□ 2.16
SHOX2-201ENST00000389589 NFKBIEO00221 500 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 JAG1P78504 1218 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 ARHGEF10LQ9HCE6 1279 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 TMEM260Q9NX78 707 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 LTBP3Q9NS15 1303 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 NDUFB10O96000 172 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 BMP6P22004 513 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 R3HDM1Q15032 1099 aaKnown RBP28.55■■■□□ 2.16
SHOX2-201ENST00000389589 CT47A1Q5JQC4 288 aaPredicted RBP28.55■■■□□ 2.16
SHOX2-201ENST00000389589 GSDMAQ96QA5 445 aa28.55■■■□□ 2.16
SHOX2-201ENST00000389589 RPS12P25398 132 aaKnown RBP28.54■■■□□ 2.16
SHOX2-201ENST00000389589 AFMP43652 599 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 CLK2P49760 499 aaKnown RBP28.54■■■□□ 2.16
SHOX2-201ENST00000389589 QRICH1Q2TAL8 776 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 SGIP1Q9BQI5 828 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 CCSER1Q9C0I3 900 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 MYOZ2Q9NPC6 264 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 DPYDQ12882 1025 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 PDXDC2PQ6P474 469 aa28.54■■■□□ 2.16
SHOX2-201ENST00000389589 BMP3P12645 472 aa28.53■■■□□ 2.16
SHOX2-201ENST00000389589 CDC37Q16543 378 aaPredicted RBP28.53■■■□□ 2.16
SHOX2-201ENST00000389589 PSTPIP2Q9H939 334 aa28.53■■■□□ 2.16
SHOX2-201ENST00000389589 WNT10BO00744 389 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 UBA7P41226 1012 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 MYH7BA7E2Y1 1941 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 TNNI2P48788 182 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 BTNL9Q6UXG8 535 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 TMEM39BQ9GZU3 492 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 TTC12Q9H892 705 aaPredicted RBP28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms