RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ACO1P21399 889 aaKnown RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 DNAJA1P31689 397 aaKnown RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF157P51786 506 aaPredicted RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 HSF5Q4G112 596 aaPredicted RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 DHX30Q7L2E3 1194 aaKnown RBP eCLIP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 KBTBD2Q8IY47 623 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 LINC00482Q8N8I6 264 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 BANK1Q8NDB2 785 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 TTC16Q8NEE8 873 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 NUP43Q8NFH3 380 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 XAGE3Q8WTP9 111 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZC3H15Q8WU90 426 aaKnown RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 GNRHR2Q96P88 292 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 ARXQ96QS3 562 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 THBS2P35442 1172 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 HILS1P60008 231 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 PRR5P85299 388 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 FOXF2Q12947 444 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 SLBPQ14493 270 aaKnown RBP eCLIP1□□□□□ -2.25
RNU6-540P-201ENST00000384622 WASHC4Q2M389 1173 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF628Q5EBL2 1059 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 PAQR3Q6TCH7 311 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 OLFML1Q6UWY5 402 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 Q6ZTC4 211 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 USP48Q86UV5 1035 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 GIMAP8Q8ND71 665 aaPredicted RBP1□□□□□ -2.25
RNU6-540P-201ENST00000384622 ALG3Q92685 438 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 ACSBG1Q96GR2 724 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 DDRGK1Q96HY6 314 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 R3HDMLQ9H3Y0 253 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 LIN7BQ9HAP6 207 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 KCNH3Q9ULD8 1083 aa1□□□□□ -2.25
RNU6-540P-201ENST00000384622 USP17L3A6NCW0 530 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 USP17L4A6NCW7 530 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 KRT86O43790 486 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 PHACTR2O75167 634 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 BMP15O95972 392 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 CYBBP04839 570 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 ACRV1P26436 265 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 WEE1P30291 646 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 ETV3P41162 512 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 KRT81Q14533 505 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 C8orf34Q49A92 452 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 DGKKQ5KSL6 1271 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 MAP1SQ66K74 1059 aaPredicted RBP0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 C16orf46Q6P387 395 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 FBXO42Q6P3S6 717 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 USP17L2Q6R6M4 530 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 ERICH6Q7L0X2 663 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 USP17L1Q7RTZ2 530 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 PLEKHM2Q8IWE5 1019 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 SRRM1Q8IYB3 904 aaKnown RBP0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 NELL1Q92832 810 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 TCF12Q99081 682 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 SAP130Q9H0E3 1048 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF768Q9H5H4 540 aaKnown RBP0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 SNRKQ9NRH2 765 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 DBR1Q9UK59 544 aaKnown RBP0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 ACSL6Q9UKU0 697 aa0.99□□□□□ -2.25
RNU6-540P-201ENST00000384622 F8W031 263 aaPredicted RBP0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 MT3P25713 68 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 PMLP29590 882 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 USPL1Q5W0Q7 1092 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 RNF111Q6ZNA4 994 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 PDZD3Q86UT5 571 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 DTWD2Q8NBA8 298 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 GPBAR1Q8TDU6 330 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 RGMAQ96B86 450 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 PCMTD1Q96MG8 357 aaPredicted RBP0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 WACQ9BTA9 647 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF703Q9H7S9 590 aaPredicted RBP0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 SYNPO2LQ9H987 977 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 FBRSQ9HAH7 460 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 TNFRSF10DQ9UBN6 386 aa0.98□□□□□ -2.25
RNU6-540P-201ENST00000384622 A0A1W2PQ27 194 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 A0A1W2PQ64 194 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 A0A1W2PQC6 194 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 A0A1W2PQD8 194 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 SSU72P8A0A1W2PR75 194 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 FADS2P1A8MWK0 482 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZBTB39O15060 712 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 GJA4P35212 333 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 CAP2P40123 477 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 CLK3P49761 638 aaKnown RBP0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 NKG7Q16617 165 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 CLEC16AQ2KHT3 1053 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 LCE1FQ5T754 118 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF425Q6IV72 752 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 PKN3Q6P5Z2 889 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 ADAMTS15Q8TE58 950 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 MBD6Q96DN6 1003 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 FAM89AQ96GI7 184 aa0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 C11orf84Q9BUA3 381 aaPredicted RBP0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 TMEFF2Q9UIK5 374 aaPredicted RBP0.97□□□□□ -2.25
RNU6-540P-201ENST00000384622 CCDC187A0A096LP49 1063 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 A0A1W2PQJ5 194 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 C1RP00736 705 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 IGKV2-30P06310 120 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 DBHP09172 617 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 PCSK2P16519 638 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms