RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 EPHB3P54753 998 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 SSPNQ14714 243 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 INTS3Q68E01 1043 aaKnown RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 DHRS1Q96LJ7 313 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 JMJD8Q96S16 334 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 OR14I1A6ND48 311 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 NUAK1O60285 661 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 MSL3P1P0C860 447 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 PRKCAP17252 672 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 SNX17Q15036 470 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 NOL9Q5SY16 702 aaKnown RBP3.81□□□□□ -1.8
VPS13A-206ENST00000376646 SLCO6A1Q86UG4 719 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 ADCY4Q8NFM4 1077 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 PANK1Q8TE04 598 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 TM9SF2Q99805 663 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 SLC12A9Q9BXP2 914 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 NOL6Q9H6R4 1146 aaKnown RBP3.81□□□□□ -1.8
VPS13A-206ENST00000376646 GP6Q9HCN6 339 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 IMPACTQ9P2X3 320 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 CBFA2T2O43439 604 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 IMPDH2P12268 514 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 IFNGR1P15260 489 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 CD247P20963 164 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 VIPR1P32241 457 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 SRSF3P84103 164 aaKnown RBP3.81□□□□□ -1.8
VPS13A-206ENST00000376646 PPP2R5DQ14738 602 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF654Q8IZM8 581 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 FIBCD1Q8N539 461 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 ZSCAN18Q8TBC5 510 aaPredicted RBP3.81□□□□□ -1.8
VPS13A-206ENST00000376646 ZDHHC15Q96MV8 337 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 TAF6LQ9Y6J9 622 aa3.81□□□□□ -1.8
VPS13A-206ENST00000376646 NUDT19A8MXV4 375 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 CIAPIN1Q6FI81 312 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 LILRA6Q6PI73 481 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 NUP43Q8NFH3 380 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 TNFRSF10DQ9UBN6 386 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 MBD1Q9UIS9 605 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF214Q9UL59 606 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-206ENST00000376646 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.8□□□□□ -1.8
VPS13A-206ENST00000376646 HCFC2Q9Y5Z7 792 aa3.8□□□□□ -1.8
VPS13A-206ENST00000376646 TEX51A0A1B0GUA7 166 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 PEX10O60683 326 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 NCKAP1LP55160 1127 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 TAB3Q8N5C8 712 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 NAT16Q8N8M0 369 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 RBBP8NLQ8NC74 664 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 GPRASP2Q96D09 838 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 FGD4Q96M96 766 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 FCRL3Q96P31 734 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 MCMBPQ9BTE3 642 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 ACBD3Q9H3P7 528 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CNTD2Q9H8S5 307 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 RAPGEFL1Q9UHV5 662 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 PLA2G2DQ9UNK4 145 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 GSNP06396 782 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CD3EP07766 207 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 PNLIPP16233 465 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 PI3P19957 117 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 VAMP1P23763 118 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 SOX9P48436 509 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 NASPP49321 788 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 PPP2R5EQ16537 467 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 GNPTABQ3T906 1256 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CWF19L1Q69YN2 538 aaKnown RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 FAM169BQ8N8A8 192 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CRBNQ96SW2 442 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 HAUS7Q99871 368 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CRTAC1Q9NQ79 661 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 KLHL14Q9P2G3 628 aa3.79□□□□□ -1.8
VPS13A-206ENST00000376646 CNOT6Q9ULM6 557 aaKnown RBP3.79□□□□□ -1.8
VPS13A-206ENST00000376646 A0A1W2PQH9 124 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 SEMA7AO75326 666 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 VAMP4O75379 141 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 TACR1P25103 407 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 EIF6P56537 245 aaKnown RBP3.78□□□□□ -1.8
VPS13A-206ENST00000376646 CYP4F8P98187 520 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 MVKQ03426 396 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 RAB3GAP1Q15042 981 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 VMACQ2NL98 169 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 GALNT18Q6P9A2 607 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 TMC6Q7Z403 805 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 SIRT5Q9NXA8 310 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 WTIPA6NIX2 430 aaPredicted RBP3.78□□□□□ -1.8
VPS13A-206ENST00000376646 EPHX1P07099 455 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 GIPRP48546 466 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 CDR1P51861 262 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 ERVFRD-1P60508 538 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 DPY19L1Q2PZI1 675 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 ANKRD39Q53RE8 183 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 SHDQ96IW2 340 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 LGR4Q9BXB1 951 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 SRRTQ9BXP5 876 aaKnown RBP3.78□□□□□ -1.8
VPS13A-206ENST00000376646 RXFP1Q9HBX9 757 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 EPB41L4AQ9HCS5 686 aaPredicted RBP3.78□□□□□ -1.8
VPS13A-206ENST00000376646 KCTD3Q9Y597 815 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 FHOD1Q9Y613 1164 aa3.78□□□□□ -1.8
VPS13A-206ENST00000376646 A0A1W2PQ45 241 aaPredicted RBP3.77□□□□□ -1.81
VPS13A-206ENST00000376646 A0A1W2PQY0 241 aa3.77□□□□□ -1.81
VPS13A-206ENST00000376646 STXBP3O00186 592 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms