RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 PDE6BP35913 854 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 PAK1Q13153 545 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 KCNJ12Q14500 433 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 TMTC2Q8N394 836 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 AFAP1L1Q8TED9 768 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 EIF3CQ99613 913 aaKnown RBP12.46□□□□□ -0.41
CCDC40-203ENST00000374877 MKRN1Q9UHC7 482 aaKnown RBP12.46□□□□□ -0.41
CCDC40-203ENST00000374877 NDUFA10O95299 355 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 FECHP22830 423 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 STAG1Q8WVM7 1258 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 NELFBQ8WX92 580 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 FERMT2Q96AC1 680 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 SHISA4Q96DD7 197 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 EFCC1Q9HA90 598 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 LIMA1Q9UHB6 759 aaKnown RBP12.46□□□□□ -0.41
CCDC40-203ENST00000374877 RPS6KA5O75582 802 aa12.46□□□□□ -0.42
CCDC40-203ENST00000374877 SPAG1Q07617 926 aa12.46□□□□□ -0.42
CCDC40-203ENST00000374877 RASGRF1Q13972 1273 aa12.46□□□□□ -0.42
CCDC40-203ENST00000374877 WDR93Q6P2C0 686 aa12.46□□□□□ -0.42
CCDC40-203ENST00000374877 RIN2Q8WYP3 895 aaPredicted RBP12.46□□□□□ -0.42
CCDC40-203ENST00000374877 V9GY48 417 aaPredicted RBP12.46□□□□□ -0.42
CCDC40-203ENST00000374877 PTGDRQ13258 359 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TRIM14Q14142 442 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TCP11X2Q5H9J9 407 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 CERS3Q8IU89 383 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 RNF26Q9BY78 433 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 ZNF804BA4D1E1 1349 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 XDHP47989 1333 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TNKSO95271 1327 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 ATP1A1P05023 1023 aaKnown RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 USP14P54578 494 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TTC31Q49AM3 519 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 MAP9Q49MG5 647 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TTC38Q5R3I4 469 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 CCDC122Q5T0U0 273 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 CAGE1Q8TC20 777 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 MMS19Q96T76 1030 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 BRMS1Q9HCU9 246 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 LEMD3Q9Y2U8 911 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 REXO2Q9Y3B8 237 aaKnown RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 NPR1P16066 1061 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 MAGEA9P43362 315 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TSR1Q2NL82 804 aaKnown RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 GSPT2Q8IYD1 628 aaKnown RBP12.45□□□□□ -0.42
CCDC40-203ENST00000374877 SAR1BQ9Y6B6 198 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 ANKRD31Q8N7Z5 1873 aa12.45□□□□□ -0.42
CCDC40-203ENST00000374877 TRAPPC11Q7Z392 1133 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 KIAA1328Q86T90 577 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 RNF41Q9H4P4 317 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 GNL3LQ9NVN8 582 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 RWDD2AQ9UIY3 292 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 GDAQ9Y2T3 454 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 NID2Q14112 1375 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 TTC26A0AVF1 554 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 SYF2O95926 243 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 NOP2P46087 812 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 CTR9Q6PD62 1173 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 C15orf52Q6ZUT6 534 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 CTCFLQ8NI51 663 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 HINFPQ9BQA5 517 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 CRACR2AQ9BSW2 395 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 LRRC37AA6NMS7 1700 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 PDS5AQ29RF7 1337 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 PLEKHA8P1O95397 391 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 BMP15O95972 392 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 STIM1Q13586 685 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 PKN1Q16512 942 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 OR8K1Q8NGG5 319 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 SDR42E1Q8WUS8 393 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 PHF20Q9BVI0 1012 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 HAUS4Q9H6D7 363 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 HPCAL4Q9UM19 191 aa12.44□□□□□ -0.42
CCDC40-203ENST00000374877 LUC7L2Q9Y383 392 aaKnown RBP12.44□□□□□ -0.42
CCDC40-203ENST00000374877 LRRC10BA6NIK2 292 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 SMIM22K7EJ46 135 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 SRGNP10124 158 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 PPARAQ07869 468 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 CAVIN4Q5BKX8 364 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 MSL1Q68DK7 614 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 LRP2BPQ9P2M1 347 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 TRIM49BA6NDI0 452 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 MCM3P25205 808 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 MCM7P33993 719 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 PACS2Q86VP3 889 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 IRS2Q9Y4H2 1338 aa12.43□□□□□ -0.42
CCDC40-203ENST00000374877 PSMD14O00487 310 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 PPFIA4O75335 1185 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 GNAT2P19087 354 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 FBXO33Q7Z6M2 555 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 ESR2Q92731 530 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 VIPAS39Q9H9C1 493 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 GTPBP6O43824 516 aaPredicted RBP12.42□□□□□ -0.42
CCDC40-203ENST00000374877 PARP1P09874 1014 aaKnown RBP12.42□□□□□ -0.42
CCDC40-203ENST00000374877 TAF1P21675 1872 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 ALDH1B1P30837 517 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 GGCXP38435 758 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 PRCPP42785 496 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 PIK3AP1Q6ZUJ8 805 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 COG1Q8WTW3 980 aa12.42□□□□□ -0.42
CCDC40-203ENST00000374877 JAKMIP2Q96AA8 810 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms