RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 IGF2BP3O00425 579 aaKnown RBP eCLIP16.35■□□□□ 0.219e-9■■■■□ 21.5
HMGA1-203ENST00000374116 IFIT3O14879 490 aaKnown RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 ZBTB43O43298 467 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CAVIN2O95810 425 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 RCAN1P53805 252 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CPLX2Q6PUV4 134 aaKnown RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 SAMD1Q6SPF0 538 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 PRRT2Q7Z6L0 340 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 IQCA1Q86XH1 822 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 RAB11FIP4Q86YS3 637 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CCAR1Q8IX12 1150 aaKnown RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CKAP2LQ8IYA6 745 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 TMEM47Q9BQJ4 181 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CCDC73Q6ZRK6 1079 aa16.34■□□□□ 0.21
HMGA1-203ENST00000374116 GINM1Q9NU53 330 aa16.34■□□□□ 0.21
HMGA1-203ENST00000374116 OGFRQ9NZT2 677 aa16.34■□□□□ 0.21
HMGA1-203ENST00000374116 NYAP2Q9P242 653 aa16.34■□□□□ 0.21
HMGA1-203ENST00000374116 TMX2Q9Y320 296 aa16.34■□□□□ 0.21
HMGA1-203ENST00000374116 BTBD19C9JJ37 291 aa16.33■□□□□ 0.21
HMGA1-203ENST00000374116 CXCL11O14625 94 aa16.33■□□□□ 0.21
HMGA1-203ENST00000374116 TCP11L1Q9NUJ3 509 aa16.33■□□□□ 0.21
HMGA1-203ENST00000374116 CETPP11597 493 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 SEC23AQ15436 765 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 TMTC2Q8N394 836 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 MYL10Q9BUA6 226 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 FTOQ9C0B1 505 aaKnown RBP eCLIP16.33■□□□□ 0.2
HMGA1-203ENST00000374116 KIAA1683Q9H0B3 1180 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 POLR3EQ9NVU0 708 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 SLC12A7Q9Y666 1083 aa16.33■□□□□ 0.2
HMGA1-203ENST00000374116 MANSC4A6NHS7 340 aaPredicted RBP16.32■□□□□ 0.2
HMGA1-203ENST00000374116 F5H6K3 240 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 YEATS4O95619 227 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 VCAM1P19320 739 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 RXRAP19793 462 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 ME1P48163 572 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 FAM160A1Q05DH4 1040 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 KLRC3Q07444 240 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 SLC20A2Q08357 652 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 ANO6Q4KMQ2 910 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 IFIT1BQ5T764 474 aaKnown RBP16.32■□□□□ 0.2
HMGA1-203ENST00000374116 OTUD7BQ6GQQ9 843 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 GPAT2Q6NUI2 795 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 NFXL1Q6ZNB6 911 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 MICU3Q86XE3 530 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 TMOD4Q9NZQ9 345 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 STK36Q9NRP7 1315 aa16.32■□□□□ 0.2
HMGA1-203ENST00000374116 A0A1W2PQ27 194 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 A0A1W2PQ64 194 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 A0A1W2PQD8 194 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 C19orf81C9J6K1 198 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 PEX10O60683 326 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 NDUFB10O96000 172 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 CYP2C8P10632 490 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 WTAPQ15007 396 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 SART3Q15020 963 aaKnown RBP16.31■□□□□ 0.2
HMGA1-203ENST00000374116 ADALQ6DHV7 355 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 USP17L2Q6R6M4 530 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 IFNL1Q8IU54 200 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 ENGASEQ8NFI3 743 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 KCNG4Q8TDN1 519 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 IPO4Q8TEX9 1081 aaKnown RBP16.31■□□□□ 0.2
HMGA1-203ENST00000374116 VCPKMTQ9H867 229 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 ERICH2A1L162 156 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 CCDC69A6NI79 296 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 GOLGA8AA7E2F4 631 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 PDHXO00330 501 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 IFNAR1P17181 557 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 NOVP48745 357 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 FAM193AP78312 1265 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 SNW1Q13573 536 aaKnown RBP16.31■□□□□ 0.2
HMGA1-203ENST00000374116 SH3D19Q5HYK7 790 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 FAM83BQ5T0W9 1011 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 MYSM1Q5VVJ2 828 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 KCTD1Q719H9 257 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 DGKHQ86XP1 1220 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 LINC00301Q8NCQ3 95 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 PNMA1Q8ND90 353 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 MKL1Q969V6 931 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 GOLPH3LQ9H4A5 285 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 RPAP3Q9H6T3 665 aaPredicted RBP16.31■□□□□ 0.2
HMGA1-203ENST00000374116 KAT14Q9H8E8 782 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 CBX8Q9HC52 389 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 GJB4Q9NTQ9 266 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 TSKSQ9UJT2 592 aa16.31■□□□□ 0.2
HMGA1-203ENST00000374116 FRMPD2Q68DX3 1309 aaPredicted RBP16.3■□□□□ 0.2
HMGA1-203ENST00000374116 KINO60870 393 aaKnown RBP16.3■□□□□ 0.2
HMGA1-203ENST00000374116 GOLGA8HP0CJ92 632 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 TOP1P11387 765 aaKnown RBP16.3■□□□□ 0.2
HMGA1-203ENST00000374116 MAP2K2P36507 400 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 USP14P54578 494 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 STK38Q15208 465 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 SLFN13Q68D06 897 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 SYNE3Q6ZMZ3 975 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 FSIP1Q8NA03 581 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 KIAA1524Q8TCG1 905 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 MRPS27Q92552 414 aaKnown RBP16.3■□□□□ 0.2
HMGA1-203ENST00000374116 TSC1Q92574 1164 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 ALG1Q9BT22 464 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 TANGO6Q9C0B7 1094 aa16.3■□□□□ 0.2
HMGA1-203ENST00000374116 R3HDMLQ9H3Y0 253 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms