RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 JMJD4Q9H9V9 463 aa16.15■□□□□ 0.18
TPM3-211ENST00000368531 SLC38A10Q9HBR0 1119 aa16.15■□□□□ 0.18
TPM3-211ENST00000368531 FAM217BQ9NTX9 383 aaPredicted RBP16.15■□□□□ 0.18
TPM3-211ENST00000368531 RBM28Q9NW13 759 aaKnown RBP16.15■□□□□ 0.18
TPM3-211ENST00000368531 hCG_1642624A0A1W2PR95 340 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 CYTH3O43739 400 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 DTNBO60941 627 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 FKTNO75072 461 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 HSPA8P11142 646 aaKnown RBP16.14■□□□□ 0.17
TPM3-211ENST00000368531 LBX1P52954 281 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 CDC37Q16543 378 aaPredicted RBP16.14■□□□□ 0.17
TPM3-211ENST00000368531 ME3Q16798 604 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 TMTC3Q6ZXV5 915 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 REPS2Q8NFH8 660 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 ZNF296Q8WUU4 475 aaPredicted RBP16.14■□□□□ 0.17
TPM3-211ENST00000368531 AGBL1Q96MI9 1066 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 PIGSQ96S52 555 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 LZTS2Q9BRK4 669 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 SPATC1LQ9H0A9 340 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 RANBP17Q9H2T7 1088 aaKnown RBP16.14■□□□□ 0.17
TPM3-211ENST00000368531 MORF4L1Q9UBU8 362 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 LIMCH1Q9UPQ0 1083 aa16.14■□□□□ 0.17
TPM3-211ENST00000368531 CCDC196A0A1B0GTZ2 297 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 CD2BP2O95400 341 aaKnown RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 FDX1P10109 184 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 STAT3P40763 770 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 CTCFP49711 727 aaPredicted RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 RCAN1P53805 252 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 QRICH1Q2TAL8 776 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 SNRNP48Q6IEG0 339 aaKnown RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 NCAPG2Q86XI2 1143 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 CD99L2Q8TCZ2 262 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 MOV10L1Q9BXT6 1211 aaKnown RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 ARHGAP39Q9C0H5 1083 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 PORCNQ9H237 461 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 RIOX1Q9H6W3 641 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 EFCC1Q9HA90 598 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 CWC22Q9HCG8 908 aaKnown RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 HOMER2Q9NSB8 354 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 ZNF214Q9UL59 606 aaPredicted RBP16.13■□□□□ 0.17
TPM3-211ENST00000368531 CCPG1Q9ULG6 757 aa16.13■□□□□ 0.17
TPM3-211ENST00000368531 CPLX1O14810 134 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 PFKFB2O60825 505 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 ALAS1P13196 640 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 CCNA1P78396 465 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 SCRN1Q12765 414 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 KIF22Q14807 665 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 USH1GQ495M9 461 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 RRP36Q96EU6 259 aaKnown RBP16.12■□□□□ 0.17
TPM3-211ENST00000368531 SPZ1Q9BXG8 430 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 RIPK3Q9Y572 518 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 ZNF536O15090 1300 aa16.12■□□□□ 0.17
TPM3-211ENST00000368531 FMNL1O95466 1100 aaPredicted RBP16.11■□□□□ 0.17
TPM3-211ENST00000368531 ICAM1P05362 532 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 ERCC3P19447 782 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 CTGFP29279 349 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 PSMC4P43686 418 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 LACTBP83111 547 aaPredicted RBP16.11■□□□□ 0.17
TPM3-211ENST00000368531 PPP2R5BQ15173 497 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 RIOX2Q8IUF8 465 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 PHKBQ93100 1093 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 TEX13BQ9BXU2 312 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 V9GY48 417 aaPredicted RBP16.11■□□□□ 0.17
TPM3-211ENST00000368531 CNTNAP5Q8WYK1 1306 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 ZNFX1Q9P2E3 1918 aaKnown RBP16.11■□□□□ 0.17
TPM3-211ENST00000368531 DOCK3Q8IZD9 2030 aa16.11■□□□□ 0.17
TPM3-211ENST00000368531 PLXNB2O15031 1838 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 ZBTB5O15062 677 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 SMARCA1P28370 1054 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 OAZ1P54368 228 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 CAP1Q01518 475 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 FBXO11Q86XK2 927 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 CCDC83Q8IWF9 413 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 MTMR8Q96EF0 704 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 ERO1AQ96HE7 468 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 ZSCAN31Q96LW9 406 aaPredicted RBP16.1■□□□□ 0.17
TPM3-211ENST00000368531 SLC26A6Q9BXS9 759 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 SEC63Q9UGP8 760 aaKnown RBP16.1■□□□□ 0.17
TPM3-211ENST00000368531 NID2Q14112 1375 aa16.1■□□□□ 0.17
TPM3-211ENST00000368531 PNMA6FA0A0J9YX94 578 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 TNPO2O14787 897 aaKnown RBP16.09■□□□□ 0.17
TPM3-211ENST00000368531 ATP2A1O14983 1001 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 PPP1R11O60927 126 aaPredicted RBP16.09■□□□□ 0.17
TPM3-211ENST00000368531 SLC25A27O95847 323 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 FCGRTP55899 365 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 AKAP17AQ02040 695 aaKnown RBP16.09■□□□□ 0.17
TPM3-211ENST00000368531 FUT2Q10981 343 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 NTRK3Q16288 839 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 NOM1Q5C9Z4 860 aaKnown RBP16.09■□□□□ 0.17
TPM3-211ENST00000368531 CPLX2Q6PUV4 134 aaKnown RBP16.09■□□□□ 0.17
TPM3-211ENST00000368531 COA7Q96BR5 231 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 TRERF1Q96PN7 1200 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 AMNQ9BXJ7 453 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 RNF146Q9NTX7 359 aa16.09■□□□□ 0.17
TPM3-211ENST00000368531 MAPK4P31152 587 aa16.08■□□□□ 0.16
TPM3-211ENST00000368531 SSRP1Q08945 709 aaKnown RBP16.08■□□□□ 0.16
TPM3-211ENST00000368531 MUM1L1Q5H9M0 696 aa16.08■□□□□ 0.16
TPM3-211ENST00000368531 GPR142Q7Z601 462 aa16.08■□□□□ 0.16
TPM3-211ENST00000368531 GTF3C6Q969F1 213 aa16.08■□□□□ 0.16
TPM3-211ENST00000368531 TRIM47Q96LD4 638 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms