RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LDLRAD1Q5T700 205 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 CCDC30Q5VVM6 783 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 COPS6Q7L5N1 327 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 SLC17A8Q8NDX2 589 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 CD99L2Q8TCZ2 262 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 XAGE3Q8WTP9 111 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 C11orf16Q9NQ32 467 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 POLR2AP24928 1970 aaKnown RBP8.66□□□□□ -1.02
VPS13A-201ENST00000355766 ZBTB48P10074 688 aaPredicted RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 RARAP10276 462 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 EIF2S2P20042 333 aaKnown RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 INHBEP58166 350 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 RPS8P62241 208 aaKnown RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 AIMP1Q12904 312 aaKnown RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 C20orf194Q5TEA3 1177 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 C8orf58Q8NAV2 365 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 FRAT1Q92837 279 aaPredicted RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 STK31Q9BXU1 1019 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 FRRS1LQ9P0K9 344 aa8.65□□□□□ -1.02
VPS13A-201ENST00000355766 NOVA2Q9UNW9 492 aaKnown RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 LAS1LQ9Y4W2 734 aaKnown RBP8.65□□□□□ -1.02
VPS13A-201ENST00000355766 SSC5DA1L4H1 1573 aa8.65□□□□□ -1.03
VPS13A-201ENST00000355766 RANBP2P49792 3224 aaKnown RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 WNT10BO00744 389 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 GPLD1P80108 840 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 NRG1Q02297 640 aaPredicted RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 CRHR2Q13324 411 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 FKBP5Q13451 457 aaPredicted RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 PRKG1Q13976 671 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 PRSS36Q5K4E3 855 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 ELMSAN1Q6PJG2 1045 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 APOBEC3FQ8IUX4 373 aaKnown RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 TSPYL6Q8N831 410 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 FAM89AQ96GI7 184 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 PRIMPOLQ96LW4 560 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 NOB1Q9ULX3 412 aaKnown RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 ANGEL1Q9UNK9 670 aaKnown RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 TRIOBPQ9H2D6 2365 aa8.64□□□□□ -1.03
VPS13A-201ENST00000355766 ZNF646O15015 1829 aaPredicted RBP8.64□□□□□ -1.03
VPS13A-201ENST00000355766 XDHP47989 1333 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 MYO3BQ8WXR4 1341 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 SASH1O94885 1247 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 CAP1Q01518 475 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 HDAC1Q13547 482 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-201ENST00000355766 MAP3K11Q16584 847 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 SLC9C1Q4G0N8 1177 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 COX20Q5RI15 118 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 B4GALNT3Q6L9W6 998 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 HFE2Q6ZVN8 426 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 TREML1Q86YW5 311 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 WNK4Q96J92 1243 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 ISCA1Q9BUE6 129 aa8.63□□□□□ -1.03
VPS13A-201ENST00000355766 MED23Q9ULK4 1368 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 IRS4O14654 1257 aaPredicted RBP8.62□□□□□ -1.03
VPS13A-201ENST00000355766 H2AFB1P0C5Y9 115 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 H2AFB2P0C5Z0 115 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 RLBP1P12271 317 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 SP3Q02447 781 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 SLC4A8Q2Y0W8 1093 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 DACT2Q5SW24 774 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 FBXO11Q86XK2 927 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 RGL4Q8IZJ4 473 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 DTWD1Q8N5C7 304 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 PLBD2Q8NHP8 589 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 PANK1Q8TE04 598 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 TTC9Q92623 222 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 CLMNQ96JQ2 1002 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 SEC31BQ9NQW1 1179 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 TLR7Q9NYK1 1049 aaKnown RBP8.62□□□□□ -1.03
VPS13A-201ENST00000355766 FZD1Q9UP38 647 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 PTCH2Q9Y6C5 1203 aa8.62□□□□□ -1.03
VPS13A-201ENST00000355766 PRMT3O60678 531 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 XYLBO75191 536 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 ATP2B4P23634 1241 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 MMP14P50281 582 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 CCT4P50991 539 aaKnown RBP8.61□□□□□ -1.03
VPS13A-201ENST00000355766 NRLP54845 237 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 OTUD7BQ6GQQ9 843 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 NBPF11Q86T75 865 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 WFDC8Q8IUA0 241 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 CMTR1Q8N1G2 835 aaKnown RBP8.61□□□□□ -1.03
VPS13A-201ENST00000355766 MXD3Q9BW11 206 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 SSBP4Q9BWG4 385 aaPredicted RBP8.61□□□□□ -1.03
VPS13A-201ENST00000355766 SMG9Q9H0W8 520 aaKnown RBP8.61□□□□□ -1.03
VPS13A-201ENST00000355766 PRO3102Q9H379 93 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 ZBTB40Q9NUA8 1239 aa8.61□□□□□ -1.03
VPS13A-201ENST00000355766 CUL9Q8IWT3 2517 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 UNCXA6NJT0 531 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 SWI5Q1ZZU3 235 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 STRIP1Q5VSL9 837 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 ITPRIPQ8IWB1 547 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 TP53INP1Q96A56 240 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 SHISA4Q96DD7 197 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 ZBED3Q96IU2 234 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-201ENST00000355766 RWDD1Q9H446 243 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-201ENST00000355766 CHPF2Q9P2E5 772 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 DBF4Q9UBU7 674 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-201ENST00000355766 ZMIZ1Q9ULJ6 1067 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms