RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZNF214Q9UL59 606 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 SLC4A7Q9Y6M7 1214 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 ZNF532Q9HCE3 1301 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 COL11A1P12107 1806 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 CYP2D7A0A087X1C5 515 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 RFXAPO00287 272 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 ADCY6O43306 1168 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 GTPBP6O43824 516 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 BEX3Q00994 111 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 CCDC144BQ3MJ40 725 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 TMEM31Q5JXX7 168 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 TMED8Q6PL24 325 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 AMOTL1Q8IY63 956 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 CPXCR1Q8N123 301 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 TMEM57Q8N5G2 664 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 DNAJC2Q99543 621 aaKnown RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 NUP88Q99567 741 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 TEX13BQ9BXU2 312 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 CERS4Q9HA82 394 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 ADAMTS5Q9UNA0 930 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 UMODL1Q5DID0 1318 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 ZNFX1Q9P2E3 1918 aaKnown RBP13.46□□□□□ -0.25
RTN3-204ENST00000354497 TCF20Q9UGU0 1960 aaKnown RBP13.46□□□□□ -0.25
RTN3-204ENST00000354497 FAM86C2PA6NEL3 165 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 PRKAB2O43741 272 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 CDK8P49336 464 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 GJA9P57773 515 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 TTF1Q15361 905 aaPredicted RBP13.46□□□□□ -0.26
RTN3-204ENST00000354497 ANKRD35Q8N283 1001 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 REPS2Q8NFH8 660 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 CCDC17Q96LX7 622 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 SLF1Q9BQI6 1058 aa13.46□□□□□ -0.26
RTN3-204ENST00000354497 UPF3AQ9H1J1 476 aaKnown RBP13.46□□□□□ -0.26
RTN3-204ENST00000354497 SMIM22K7EJ46 135 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 GOLIM4O00461 696 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 CD4P01730 458 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 NUBP1P53384 320 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 CXCL17Q6UXB2 119 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 MAMDC4Q6UXC1 1216 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 RIPK3Q9Y572 518 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 PCDHA11Q9Y5I1 949 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 PARP14Q460N5 1801 aa13.45□□□□□ -0.26
RTN3-204ENST00000354497 GBF1Q92538 1859 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 ERC2O15083 957 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 ZBED4O75132 1171 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 MBD4O95243 580 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 ATP2A2P16615 1042 aaKnown RBP13.44□□□□□ -0.26
RTN3-204ENST00000354497 ARMCX2Q7L311 632 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 RASEFQ8IZ41 740 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 SCLYQ96I15 445 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 ABHD16BQ9H3Z7 469 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 KANSL2Q9H9L4 492 aa13.44□□□□□ -0.26
RTN3-204ENST00000354497 RAVER2Q9HCJ3 691 aaKnown RBP13.44□□□□□ -0.26
RTN3-204ENST00000354497 NOP58Q9Y2X3 529 aaKnown RBP13.44□□□□□ -0.26
RTN3-204ENST00000354497 MYH8P13535 1937 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 ITGA7Q13683 1181 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 ZNF467Q7Z7K2 595 aaPredicted RBP13.43□□□□□ -0.26
RTN3-204ENST00000354497 RPUSD2Q8IZ73 545 aaKnown RBP13.43□□□□□ -0.26
RTN3-204ENST00000354497 STK11IPQ8N1F8 1099 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 KIFC2Q96AC6 838 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 DDRGK1Q96HY6 314 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 TRPV6Q9H1D0 765 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 IL1RAPL2Q9NP60 686 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 HOMER2Q9NSB8 354 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 EXOC6BQ9Y2D4 811 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 MTCH2Q9Y6C9 303 aa13.43□□□□□ -0.26
RTN3-204ENST00000354497 CHD9Q3L8U1 2897 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 DNAJC25-GNG10A0A024R161 153 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.42□□□□□ -0.26
RTN3-204ENST00000354497 USP17L12C9JPN9 530 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 USP17L21D6R901 530 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 CA3P07451 260 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 TNFAIP2Q03169 654 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 SLFNL1Q499Z3 407 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 TMEM67Q5HYA8 995 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 KRT40Q6A162 431 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 C16orf86Q6ZW13 317 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 DEFB128Q7Z7B8 93 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 ALYREFQ86V81 257 aaKnown RBP13.42□□□□□ -0.26
RTN3-204ENST00000354497 CCDC144CPQ8IYA2 1237 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 ARNTL2Q8WYA1 636 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 NOC4LQ9BVI4 516 aaKnown RBP13.42□□□□□ -0.26
RTN3-204ENST00000354497 AP5M1Q9H0R1 490 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 WNT8AQ9H1J5 351 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 ATP8A2Q9NTI2 1148 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 ISY1Q9ULR0 285 aaKnown RBP13.42□□□□□ -0.26
RTN3-204ENST00000354497 COG5Q9UP83 839 aa13.42□□□□□ -0.26
RTN3-204ENST00000354497 ARIH1Q9Y4X5 557 aaPredicted RBP13.42□□□□□ -0.26
RTN3-204ENST00000354497 TCRBV5S4A2TA0A5A2 114 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 CTAGE5O15320 804 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 B4GALT4O60513 344 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 PSMC6P62333 389 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 C12orf60Q5U649 245 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 ZKSCAN2Q63HK3 967 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 TLK2Q86UE8 772 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 ERC1Q8IUD2 1116 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 ITPRIPQ8IWB1 547 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 SP7Q8TDD2 431 aaPredicted RBP13.41□□□□□ -0.26
RTN3-204ENST00000354497 BDP1A6H8Y1 2624 aa13.41□□□□□ -0.26
RTN3-204ENST00000354497 ZEB2O60315 1214 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms