RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PDHBP11177 359 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 IBSPP21815 317 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 TNFRSF8P28908 595 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 CYLC1P35663 651 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 VAV2P52735 878 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 IFT88Q13099 833 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 ZNF174Q15697 407 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 RNF187Q5TA31 235 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 CCDC70Q6NSX1 233 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 NLRP14Q86W24 1093 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 TTC5Q8N0Z6 440 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 FERMT2Q96AC1 680 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 FAXDC2Q96IV6 333 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 CCT8L2Q96SF2 557 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 STRBPQ96SI9 672 aaKnown RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 RUFY1Q96T51 708 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.58□□□□□ -1.22e-6■■■■□ 22.8
VPS39-202ENST00000348544 DISP2A7MBM2 1401 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 RGPD5Q99666 1765 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 CHD4Q14839 1912 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 A6NNZ2 444 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 B4DLN1 442 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 PES1O00541 588 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 NCK2O43639 380 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 GTPBP6O43824 516 aaPredicted RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 MOCS3O95396 460 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 PDE6AP16499 860 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 CEBPAP49715 358 aaPredicted RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 PKN1Q16512 942 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 IL17AQ16552 155 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 TUBB8Q3ZCM7 444 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 CCDC43Q96MW1 224 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 OSBPL9Q96SU4 736 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 CARD10Q9BWT7 1032 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 ZBTB3Q9H5J0 574 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 RBM12Q9NTZ6 932 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 TIAM2Q8IVF5 1701 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 ESYT3A0FGR9 886 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 H7C1D1 291 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 NKRFO15226 690 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS39-202ENST00000348544 ECM2O94769 699 aaPredicted RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 RPN1P04843 607 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 GLI1P08151 1106 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 SRGNP10124 158 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 NR1D1P20393 614 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 RDXP35241 583 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 CARSP49589 748 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 PTGDRQ13258 359 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 PLCB4Q15147 1175 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 UBE3CQ15386 1083 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 NPY5RQ15761 445 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 TSR1Q2NL82 804 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 CEP85LQ5SZL2 805 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 MICALCLQ6ZW33 695 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 IQCA1Q86XH1 822 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 ADSSL1Q8N142 457 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 RBM33Q96EV2 1170 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 PHF20Q9BVI0 1012 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 CENPHQ9H3R5 247 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 SH2D4AQ9H788 454 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 DDX20Q9UHI6 824 aaKnown RBP7.57□□□□□ -1.2
VPS39-202ENST00000348544 ODF2LQ9ULJ1 636 aa7.57□□□□□ -1.2
VPS39-202ENST00000348544 PAX7P23759 505 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MDH1P40925 334 aaKnown RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 ATP2C1P98194 919 aaPredicted RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 SATB1Q01826 763 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 KIF5AQ12840 1032 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 WTAPQ15007 396 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 ALX1Q15699 326 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 CCDC57Q2TAC2 916 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 RRP12Q5JTH9 1297 aaKnown RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 AKNAD1Q5T1N1 836 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 CCDC170Q8IYT3 715 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 IFNL3Q8IZI9 196 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 ZNF654Q8IZM8 581 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 FANCBQ8NB91 859 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 TRIM58Q8NG06 486 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 NUP133Q8WUM0 1156 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 TNFRSF25Q93038 417 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 EEF2KMTQ96G04 330 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 VEZTQ9HBM0 779 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 SALL4Q9UJQ4 1053 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 NFU1Q9UMS0 254 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MYH6P13533 1939 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MEGF6O75095 1541 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 SOS2Q07890 1332 aaPredicted RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 DNM1LO00429 736 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 FAM107AO95990 144 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 GCFC2P16383 781 aaKnown RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 PRLRP16471 622 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 EEF1GP26641 437 aaKnown RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 NF2P35240 595 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 KRT2P35908 639 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MRPL12P52815 198 aaKnown RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 ZBED6P86452 979 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 PPARDQ03181 441 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 ITGB3BPQ13352 177 aaPredicted RBP7.56□□□□□ -1.2
VPS39-202ENST00000348544 TRADDQ15628 312 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 CCDC96Q2M329 555 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 CFAP58Q5T655 872 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms