RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 MRPL44Q9H9J2 332 aaKnown RBP17.43■□□□□ 0.38
UPF3B-202ENST00000345865 TRIM49BA6NDI0 452 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 PMS1P54277 932 aaKnown RBP17.43■□□□□ 0.38
UPF3B-202ENST00000345865 PICALMQ13492 652 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 LETM2Q2VYF4 491 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 IRF2BP1Q8IU81 584 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 CLEC10AQ8IUN9 316 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 CERS5Q8N5B7 392 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 VPS16Q9H269 839 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 KBTBD4Q9NVX7 518 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 MYH8P13535 1937 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 F8W031 263 aaPredicted RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 MFAP3LO75121 409 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 UBA7P41226 1012 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 TCP11X2Q5H9J9 407 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 PPFIBP1Q86W92 1011 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 PROM2Q8N271 834 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 MXD3Q9BW11 206 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 DDX4Q9NQI0 724 aaKnown RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 RMND1Q9NWS8 449 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 CCNT1O60563 726 aaKnown RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 URI1O94763 535 aaPredicted RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 PRPHP41219 470 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 GABPAQ06546 454 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 ADSSL1Q8N142 457 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 RRP36Q96EU6 259 aaKnown RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 IRX2Q9BZI1 471 aaPredicted RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 TAB2Q9NYJ8 693 aa17.42■□□□□ 0.38
UPF3B-202ENST00000345865 TRPC5Q9UL62 973 aaPredicted RBP17.42■□□□□ 0.38
UPF3B-202ENST00000345865 ANKRD31Q8N7Z5 1873 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 FRMPD2Q68DX3 1309 aaPredicted RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 LAD1O00515 517 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 N4BP3O15049 544 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 TRIM37O94972 964 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 PDHBP11177 359 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 COPB1P53618 953 aaKnown RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 GNG11P61952 73 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 NONOQ15233 471 aaKnown RBP eCLIP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 TXNRD1Q16881 649 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 FILIP1LQ4L180 1135 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 SLC27A3Q5K4L6 730 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 SLF2Q8IX21 1173 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 ZNF397Q8NF99 534 aaPredicted RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 RASSF8Q8NHQ8 419 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 KCNJ18B7U540 433 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 PPEF1O14829 653 aaPredicted RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 AKR1B1P15121 316 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 EIF6P56537 245 aaKnown RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 KCNJ12Q14500 433 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 KRT25Q7Z3Z0 450 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 SP8Q8IXZ3 490 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 KIFC2Q96AC6 838 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 RIOX1Q9H6W3 641 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 TMEM260Q9NX78 707 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 MTMR4Q9NYA4 1195 aa17.41■□□□□ 0.38
UPF3B-202ENST00000345865 BIN2Q9UBW5 565 aaPredicted RBP17.41■□□□□ 0.38
UPF3B-202ENST00000345865 ITIH6Q6UXX5 1313 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 EDIL3O43854 480 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 OR52Z1P0C646 297 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 PLCG1P19174 1290 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 CREBRFQ8IUR6 639 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 LRRC47Q8N1G4 583 aaKnown RBP17.4■□□□□ 0.38
UPF3B-202ENST00000345865 TBCKQ8TEA7 893 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 FEZ1Q99689 392 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 C6orf50Q9HD87 102 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 PRDM10Q9NQV6 1147 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 ADGRG1Q9Y653 693 aa17.4■□□□□ 0.38
UPF3B-202ENST00000345865 GOLGA6L9A6NEM1 432 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 SLURP2P0DP57 97 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 SMARCA1P28370 1054 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 KCNB1Q14721 858 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 JAKMIP3Q5VZ66 844 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 NEK8Q86SG6 692 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 CABP7Q86V35 215 aa17.39■□□□□ 0.38
UPF3B-202ENST00000345865 SEC63Q9UGP8 760 aaKnown RBP17.39■□□□□ 0.38
UPF3B-202ENST00000345865 DDX41Q9UJV9 622 aaKnown RBP17.39■□□□□ 0.38
UPF3B-202ENST00000345865 ADAMTSL1Q8N6G6 1762 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 PLIN4Q96Q06 1357 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 RHOBTB3O94955 611 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 GNA11P29992 359 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 CCDC12Q8WUD4 166 aaPredicted RBP17.39■□□□□ 0.37
UPF3B-202ENST00000345865 COA7Q96BR5 231 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 MMTAG2Q9BU76 263 aaKnown RBP17.39■□□□□ 0.37
UPF3B-202ENST00000345865 CARD6Q9BX69 1037 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 ATP6V0A2Q9Y487 856 aa17.39■□□□□ 0.37
UPF3B-202ENST00000345865 IGKV6D-41A0A0C4DH26 115 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 FECHP22830 423 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 TECP42680 631 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 DPP8Q6V1X1 898 aaPredicted RBP17.38■□□□□ 0.37
UPF3B-202ENST00000345865 POTEDQ86YR6 584 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 GIMAP8Q8ND71 665 aaPredicted RBP17.38■□□□□ 0.37
UPF3B-202ENST00000345865 H7C1D1 291 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 CCDC175P0C221 793 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 H2AFXP16104 143 aaPredicted RBP17.38■□□□□ 0.37
UPF3B-202ENST00000345865 HSPA1LP34931 641 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 MAP3K9P80192 1104 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 NAA15Q9BXJ9 866 aaKnown RBP17.38■□□□□ 0.37
UPF3B-202ENST00000345865 COA1Q9GZY4 146 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 ZNF446Q9NWS9 450 aa17.38■□□□□ 0.37
UPF3B-202ENST00000345865 SNHG28P0DPA3 235 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms