RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ZNF622Q969S3 477 aaKnown RBP eCLIP13.8□□□□□ -0.21e-7■■□□□ 12.6
SNRNP48-201ENST00000342415 EXOC4Q96A65 974 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 FBXO2Q9UK22 296 aaPredicted RBP13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 ZBTB21Q9ULJ3 1066 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 KCNK3O14649 394 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 TNNC1P63316 161 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 NCAPHQ15003 741 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 DIXDC1Q155Q3 683 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 CEP85LQ5SZL2 805 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 CAPS2Q9BXY5 557 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 KANSL2Q9H9L4 492 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 TUBE1Q9UJT0 475 aa13.8□□□□□ -0.2
SNRNP48-201ENST00000342415 FTCDO95954 541 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 CFAP221Q4G0U5 840 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 TRIM58Q8NG06 486 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 ABCB4P21439 1286 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 IFT20Q8IY31 132 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 NHEJ1Q9H9Q4 299 aaPredicted RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 CAPN7Q9Y6W3 813 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 ADAMTS13Q76LX8 1427 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 GOLGA6L10A0A0M3HER8 536 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 ATP8B1O43520 1251 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 GSTO1P78417 241 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 PPFIA1Q13136 1202 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 TMEM132AQ24JP5 1023 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 ZNF658Q5TYW1 1059 aaPredicted RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 USP17L2Q6R6M4 530 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 PCDHB13Q9Y5F0 798 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 FHOD1Q9Y613 1164 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 MAP3K9P80192 1104 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 FAM98CQ17RN3 349 aaKnown RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 CCDC84Q86UT8 332 aaPredicted RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 NOA1Q8NC60 698 aaKnown RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 LSM14BQ9BX40 385 aaKnown RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 LRRC27Q9C0I9 530 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 MKRN1Q9UHC7 482 aaKnown RBP13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 RIPOR2Q9Y4F9 1068 aa13.79□□□□□ -0.2
SNRNP48-201ENST00000342415 ZNF185O15231 689 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 OR52Z1P0C646 297 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 CYP2C19P33261 490 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 EYA3Q99504 573 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 NPHP4O75161 1426 aaPredicted RBP13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 ANKARQ7Z5J8 1434 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 ESYT3A0FGR9 886 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 PLCG1P19174 1290 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 PRDX5P30044 214 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 DAAM2Q86T65 1068 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 SLC44A5Q8NCS7 719 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 GPR101Q96P66 508 aaPredicted RBP13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 KRT12Q99456 494 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 DPH5Q9H2P9 285 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 MED4Q9NPJ6 270 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 MROH1Q8NDA8 1641 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 PTPRUQ92729 1446 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 PALLDQ8WX93 1383 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 UFL1O94874 794 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 EIF4A3P38919 411 aaKnown RBP13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 IRX3P78415 501 aaPredicted RBP13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 SFMBT2Q5VUG0 894 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 CCDC65Q8IXS2 484 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 CUL5Q93034 780 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 L2HGDHQ9H9P8 463 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 EPB41L5Q9HCM4 733 aa13.78□□□□□ -0.2
SNRNP48-201ENST00000342415 CETN3O15182 167 aa13.77□□□□□ -0.2
SNRNP48-201ENST00000342415 CRKLP46109 303 aaKnown RBP13.77□□□□□ -0.2
SNRNP48-201ENST00000342415 TCP10Q12799 353 aa13.77□□□□□ -0.2
SNRNP48-201ENST00000342415 IFI16Q16666 785 aaKnown RBP13.77□□□□□ -0.2
SNRNP48-201ENST00000342415 USH1GQ495M9 461 aa13.77□□□□□ -0.2
SNRNP48-201ENST00000342415 ATP1A1P05023 1023 aaKnown RBP13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 RPS6KA1Q15418 735 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 KRT25Q7Z3Z0 450 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 ISCA1Q9BUE6 129 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 EPB41L4AQ9HCS5 686 aaPredicted RBP13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 RWDD2AQ9UIY3 292 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 UTYO14607 1347 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 HLA-DOAP06340 250 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 LONP1P36776 959 aaKnown RBP13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 ASIC2Q16515 512 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 KRT71Q3SY84 523 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 ZNF804AQ7Z570 1209 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 MB21D1Q8N884 522 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 COA7Q96BR5 231 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 CABS1Q96KC9 395 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 MLXIPQ9HAP2 919 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 HYOU1Q9Y4L1 999 aa13.77□□□□□ -0.21
SNRNP48-201ENST00000342415 WDR17Q8IZU2 1322 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 VIMP08670 466 aaKnown RBP13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 P2RX5Q93086 422 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 SPDYE3A6NKU9 549 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 PRPF3O43395 683 aaKnown RBP13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 TBC1D8O95759 1140 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 PTPAQ15257 358 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 NEK8Q86SG6 692 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 MRRFQ96E11 262 aaKnown RBP13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 ZNF446Q9NWS9 450 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 SMARCAL1Q9NZC9 954 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 NCK2O43639 380 aa13.76□□□□□ -0.21
SNRNP48-201ENST00000342415 GBP2P32456 591 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms