RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 BARGINQ6ZT62 677 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 HEATR4Q86WZ0 1026 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 IFT74Q96LB3 600 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 TRPA1O75762 1119 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 PARNO95453 639 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 SP4Q02446 784 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 TMTC1Q8IUR5 882 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 TANC1Q9C0D5 1861 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC69A6NI79 296 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 PEX14O75381 377 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 DDR1Q08345 913 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MAP7Q14244 749 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 TMEM259Q4ZIN3 620 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC110Q8TBZ0 833 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 SUFUQ9UMX1 484 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 SIPA1L3O60292 1781 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF185O15231 689 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MYCP01106 439 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 C4orf46Q504U0 113 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 RUFY4Q6ZNE9 571 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 DYDC2Q96IM9 177 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 EDEM3Q9BZQ6 932 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 KANSL2Q9H9L4 492 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 OAS2P29728 719 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 HSPA4P34932 840 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ACTN2P35609 894 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 UAP1Q16222 522 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MYSM1Q5VVJ2 828 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 RASGRP2Q7LDG7 609 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 NLRP2Q9NX02 1062 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 PRPF3O43395 683 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ZSCAN26Q16670 478 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 LRRC36Q1X8D7 754 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 GNL3LQ9NVN8 582 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 GFAPP14136 432 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 RAPGEF1Q13905 1077 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CFAP100Q494V2 611 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 GDAP1Q8TB36 358 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MS4A14Q96JA4 679 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MDC1Q14676 2089 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 DENND2CQ68D51 928 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 NAIF1Q69YI7 327 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 FLOT1O75955 427 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CFAP58Q5T655 872 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 RBM43Q6ZSC3 357 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ACTR5Q9H9F9 607 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ARHGAP6O43182 974 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 NUGGCQ68CJ6 796 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 KIF2CQ99661 725 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 MTRQ99707 1265 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 BASP1P80723 227 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 BHMTQ93088 406 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 LRRC27Q9C0I9 530 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ZFXP17010 805 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 TCERG1LQ5VWI1 586 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CEP57L1Q8IYX8 460 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ATL2Q8NHH9 583 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 ESF1Q9H501 851 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 CYTH3O43739 400 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 DDX46Q7L014 1031 aaKnown RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 SSX2IPQ9Y2D8 614 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 POLGP54098 1239 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-201ENST00000341594 BIRC3Q13489 604 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 PFDN4Q9NQP4 134 aa3.91□□□□□ -1.78
SYNE1-201ENST00000341594 SAPCD2Q86UD0 394 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 BBS2Q9BXC9 721 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF165P49910 485 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF75DP51815 510 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 UNC5CLQ8IV45 518 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 CABLES1Q8TDN4 633 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 POP5Q969H6 163 aaKnown RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 UBAC1Q9BSL1 405 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 EPS8L2Q9H6S3 715 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 ABCB6Q9NP58 842 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 HELLSQ9NRZ9 838 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 CTTNBP2NLQ9P2B4 639 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 MCTP2Q6DN12 878 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 CPLX2Q6PUV4 134 aaKnown RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 RSPH1Q8WYR4 309 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 FAM227BQ96M60 508 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 PLCB1Q9NQ66 1216 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 THEGQ9P2T0 379 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 SLFN14P0C7P3 912 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 SYT1P21579 422 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 ANKRD13BQ86YJ7 626 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 RSPH9Q9H1X1 276 aaPredicted RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 TSPYL2Q9H2G4 693 aaPredicted RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 CABS1Q96KC9 395 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 MKNK1Q9BUB5 465 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 EIF3CLB5ME19 914 aaKnown RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 NCK2O43639 380 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 NMIQ13287 307 aaPredicted RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 SDR16C5Q8N3Y7 309 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 TDRD7Q8NHU6 1098 aaKnown RBP3.9□□□□□ -1.78
SYNE1-201ENST00000341594 KCNG4Q8TDN1 519 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 SAT1P21673 171 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 PARD6BQ9BYG5 372 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 DKK3Q9UBP4 350 aa3.9□□□□□ -1.78
SYNE1-201ENST00000341594 HOXB7P09629 217 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms